Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 AL033527.5-202ENST00000641632 1098 ntBASIC16.07■□□□□ 0.16
PCDH9Q9HC56 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH9Q9HC56 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 AL009178.2-201ENST00000597278 2719 ntBASIC16.06■□□□□ 0.16
PCDH9Q9HC56 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 AC100757.3-201ENST00000622361 1406 ntBASIC16.06■□□□□ 0.16
PCDH9Q9HC56 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 AL390754.1-201ENST00000619088 582 ntBASIC16.06■□□□□ 0.16
PCDH9Q9HC56 AL590560.3-201ENST00000623350 461 ntBASIC16.06■□□□□ 0.16
PCDH9Q9HC56 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms