Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 TSPY26P-202ENST00000565928 3884 ntBASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 AC126177.1-201ENST00000547829 2218 ntBASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 DRD5P1-201ENST00000456605 1438 ntBASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 ANKRD19P-201ENST00000338192 862 ntBASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 KRT223P-202ENST00000449164 1292 ntBASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 GAPDHP40-201ENST00000505218 1006 ntBASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 AC104989.1-201ENST00000519711 778 ntBASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 AP001889.1-201ENST00000525414 633 ntBASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 AC015910.1-201ENST00000579400 975 ntBASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 MIR4313-201ENST00000580760 101 ntBASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 AC093813.1-201ENST00000605066 256 ntBASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 AC133552.6-201ENST00000613406 534 ntBASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 TP73-209ENST00000603362 1668 ntTSL 5 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
TRAIPQ9BWF2 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 LINC02447-202ENST00000501888 2146 ntBASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.02■□□□□ 0.32
TRAIPQ9BWF2 AC112504.1-201ENST00000623415 1841 ntBASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms