Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TTC28Q96AY4 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 AC092862.1-201ENST00000541534 533 ntBASIC15.35■□□□□ 0.05
TTC28Q96AY4 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TTC28Q96AY4 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TTC28Q96AY4 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.34■□□□□ 0.05
TTC28Q96AY4 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 AC144522.1-201ENST00000625111 1658 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 NQO2-204ENST00000380454 851 ntTSL 2 BASIC15.34■□□□□ 0.05
TTC28Q96AY4 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC15.34■□□□□ 0.05
TTC28Q96AY4 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC15.34■□□□□ 0.05
TTC28Q96AY4 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC15.34■□□□□ 0.05
TTC28Q96AY4 RPSAP15-201ENST00000448168 861 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 ORAOV1P1-201ENST00000503108 395 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.34■□□□□ 0.05
TTC28Q96AY4 MIR2392-201ENST00000584881 84 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC15.34■□□□□ 0.05
TTC28Q96AY4 AC006483.2-201ENST00000609813 515 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 MIR6893-201ENST00000613458 69 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.34■□□□□ 0.05
TTC28Q96AY4 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC15.34■□□□□ 0.05
TTC28Q96AY4 AP003680.1-201ENST00000598970 3660 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
TTC28Q96AY4 PTGER4P2-201ENST00000328411 252 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 PTGER4P3-201ENST00000458150 252 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC15.34■□□□□ 0.05
TTC28Q96AY4 GOLGA2P7-209ENST00000560408 745 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 AC007326.1-201ENST00000604539 458 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 AL603764.1-201ENST00000636452 321 ntBASIC15.34■□□□□ 0.05
TTC28Q96AY4 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
TTC28Q96AY4 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.34■□□□□ 0.05
TTC28Q96AY4 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TTC28Q96AY4 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
TTC28Q96AY4 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TTC28Q96AY4 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.05
TTC28Q96AY4 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TTC28Q96AY4 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TTC28Q96AY4 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TTC28Q96AY4 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
TTC28Q96AY4 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
TTC28Q96AY4 FTX-216ENST00000638985 1367 ntTSL 5 BASIC15.33■□□□□ 0.05
TTC28Q96AY4 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TTC28Q96AY4 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
TTC28Q96AY4 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TTC28Q96AY4 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
TTC28Q96AY4 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.33■□□□□ 0.05
TTC28Q96AY4 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 AC012508.2-201ENST00000567613 1472 ntBASIC15.33■□□□□ 0.04
TTC28Q96AY4 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 OR3A1-202ENST00000615105 966 ntBASIC15.33■□□□□ 0.04
TTC28Q96AY4 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms