Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ERCC4Q92889 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ERCC4Q92889 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
ERCC4Q92889 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ERCC4Q92889 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ERCC4Q92889 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
ERCC4Q92889 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ERCC4Q92889 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
ERCC4Q92889 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.7■□□□□ 0.42
ERCC4Q92889 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
ERCC4Q92889 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ERCC4Q92889 HTR5BP-201ENST00000430851 1154 ntBASIC17.7■□□□□ 0.42
ERCC4Q92889 AL671883.3-201ENST00000603274 991 ntBASIC17.7■□□□□ 0.42
ERCC4Q92889 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ERCC4Q92889 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
ERCC4Q92889 C20orf181-201ENST00000623918 480 ntBASIC17.7■□□□□ 0.42
ERCC4Q92889 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.7■□□□□ 0.42
ERCC4Q92889 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
ERCC4Q92889 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC17.7■□□□□ 0.42
ERCC4Q92889 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
ERCC4Q92889 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
ERCC4Q92889 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ERCC4Q92889 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
ERCC4Q92889 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
ERCC4Q92889 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ERCC4Q92889 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.7■□□□□ 0.42
ERCC4Q92889 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
ERCC4Q92889 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
ERCC4Q92889 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
ERCC4Q92889 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
ERCC4Q92889 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.69■□□□□ 0.42
ERCC4Q92889 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
ERCC4Q92889 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 FGD5P1-202ENST00000614866 2498 ntBASIC17.69■□□□□ 0.42
ERCC4Q92889 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.69■□□□□ 0.42
ERCC4Q92889 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.69■□□□□ 0.42
ERCC4Q92889 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
ERCC4Q92889 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.69■□□□□ 0.42
ERCC4Q92889 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.69■□□□□ 0.42
ERCC4Q92889 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.69■□□□□ 0.42
ERCC4Q92889 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.69■□□□□ 0.42
ERCC4Q92889 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC17.69■□□□□ 0.42
ERCC4Q92889 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.69■□□□□ 0.42
ERCC4Q92889 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC17.69■□□□□ 0.42
ERCC4Q92889 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.69■□□□□ 0.42
ERCC4Q92889 UCKL1-AS1-201ENST00000623569 3602 ntBASIC17.69■□□□□ 0.42
ERCC4Q92889 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
ERCC4Q92889 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
ERCC4Q92889 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
ERCC4Q92889 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
ERCC4Q92889 AC013726.1-201ENST00000563747 2285 ntBASIC17.69■□□□□ 0.42
ERCC4Q92889 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
ERCC4Q92889 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
ERCC4Q92889 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC4Q92889 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
ERCC4Q92889 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.68■□□□□ 0.42
ERCC4Q92889 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
ERCC4Q92889 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
ERCC4Q92889 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
ERCC4Q92889 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.68■□□□□ 0.42
ERCC4Q92889 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 MYO15B-237ENST00000642007 4893 ntBASIC17.68■□□□□ 0.42
ERCC4Q92889 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.68■□□□□ 0.42
ERCC4Q92889 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.68■□□□□ 0.42
ERCC4Q92889 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC17.68■□□□□ 0.42
ERCC4Q92889 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms