Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC132938.4-201ENST00000623835 848 ntBASIC15.08■□□□□ 0
LMX1AQ8TE12 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.08■□□□□ 0
LMX1AQ8TE12 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
LMX1AQ8TE12 AL138709.1-201ENST00000614840 1693 ntBASIC15.08■□□□□ 0
LMX1AQ8TE12 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
LMX1AQ8TE12 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.08■□□□□ 0
LMX1AQ8TE12 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.08■□□□□ 0
LMX1AQ8TE12 AC024909.3-201ENST00000611513 2257 ntBASIC15.08■□□□□ 0
LMX1AQ8TE12 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
LMX1AQ8TE12 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
LMX1AQ8TE12 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.07■□□□□ 0
LMX1AQ8TE12 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.07■□□□□ 0
LMX1AQ8TE12 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.07■□□□□ 0
LMX1AQ8TE12 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.07■□□□□ 0
LMX1AQ8TE12 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.07■□□□□ 0
LMX1AQ8TE12 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.07■□□□□ 0
LMX1AQ8TE12 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.07■□□□□ 0
LMX1AQ8TE12 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
LMX1AQ8TE12 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.07■□□□□ 0
LMX1AQ8TE12 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 MIR1202-201ENST00000408529 83 ntBASIC15.07■□□□□ 0
LMX1AQ8TE12 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.07■□□□□ 0
LMX1AQ8TE12 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.07■□□□□ 0
LMX1AQ8TE12 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.07■□□□□ 0
LMX1AQ8TE12 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.07■□□□□ 0
LMX1AQ8TE12 RNA5SP486-201ENST00000515961 83 ntBASIC15.07■□□□□ 0
LMX1AQ8TE12 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.07■□□□□ 0
LMX1AQ8TE12 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 AC243960.2-201ENST00000600996 747 ntBASIC15.07■□□□□ 0
LMX1AQ8TE12 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC15.07■□□□□ 0
LMX1AQ8TE12 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.07■□□□□ 0
LMX1AQ8TE12 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.07■□□□□ 0
LMX1AQ8TE12 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.07■□□□□ 0
LMX1AQ8TE12 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 AHCYP2-201ENST00000430630 1300 ntBASIC15.07■□□□□ 0
LMX1AQ8TE12 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 AL603832.2-201ENST00000566195 2125 ntBASIC15.07■□□□□ 0
LMX1AQ8TE12 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
LMX1AQ8TE12 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.07■□□□□ 0
LMX1AQ8TE12 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
LMX1AQ8TE12 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
LMX1AQ8TE12 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
LMX1AQ8TE12 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1AQ8TE12 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
LMX1AQ8TE12 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 AC022188.1-201ENST00000620960 1664 ntBASIC15.06■□□□□ 0
LMX1AQ8TE12 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.06■□□□□ 0
LMX1AQ8TE12 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
LMX1AQ8TE12 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.06■□□□□ 0
LMX1AQ8TE12 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.06■□□□□ 0
LMX1AQ8TE12 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.06■□□□□ 0
LMX1AQ8TE12 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.06■□□□□ 0
LMX1AQ8TE12 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.06■□□□□ 0
LMX1AQ8TE12 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.06■□□□□ 0
LMX1AQ8TE12 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.06■□□□□ 0
LMX1AQ8TE12 ACTBP8-201ENST00000403258 1108 ntBASIC15.06■□□□□ 0
LMX1AQ8TE12 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.06■□□□□ 0
LMX1AQ8TE12 NUS1P3-201ENST00000423502 862 ntBASIC15.06■□□□□ 0
LMX1AQ8TE12 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC15.06■□□□□ 0
LMX1AQ8TE12 AC004066.1-201ENST00000502488 802 ntBASIC15.06■□□□□ 0
LMX1AQ8TE12 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.06■□□□□ 0
LMX1AQ8TE12 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
LMX1AQ8TE12 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.06■□□□□ 0
LMX1AQ8TE12 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms