Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CLCNKB-202ENST00000375679 2567 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 PLB1-201ENST00000327757 5107 ntAPPRIS P3 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CAMK2A-201ENST00000348628 5322 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 AC015819.3-201ENST00000624305 2674 ntBASIC9.63□□□□□ -0.87
LINC00643Q86TS7 EBF2-203ENST00000520164 5145 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 FAM90A11P-201ENST00000518378 2218 ntBASIC9.63□□□□□ -0.87
LINC00643Q86TS7 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 FBXO22-201ENST00000308275 10725 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 HYOU1-217ENST00000612687 4360 ntTSL 5 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 AC110048.1-201ENST00000604293 2157 ntBASIC9.63□□□□□ -0.87
LINC00643Q86TS7 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 SCAF8-203ENST00000417268 4944 ntTSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 WWOX-216ENST00000569818 525 ntBASIC9.63□□□□□ -0.87
LINC00643Q86TS7 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 MIR4674-201ENST00000582457 87 ntBASIC9.63□□□□□ -0.87
LINC00643Q86TS7 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 SIGLEC29P-201ENST00000599873 1114 ntBASIC9.63□□□□□ -0.87
LINC00643Q86TS7 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 ABBA01031661.1-201ENST00000634362 1253 ntBASIC9.63□□□□□ -0.87
LINC00643Q86TS7 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 DIDO1-204ENST00000370368 2704 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 U82695.1-201ENST00000635752 1889 ntBASIC9.63□□□□□ -0.87
LINC00643Q86TS7 YTHDC1-201ENST00000344157 6232 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 BCL2L13-214ENST00000543133 4975 ntTSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 BCL2L13-217ENST00000618481 4961 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 SYNM-203ENST00000560674 5908 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 DAXX-202ENST00000374542 2613 ntAPPRIS P2 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 SUPT20HL1-201ENST00000436466 2618 ntBASIC9.63□□□□□ -0.87
LINC00643Q86TS7 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 AC092368.3-202ENST00000574180 1591 ntBASIC9.63□□□□□ -0.87
LINC00643Q86TS7 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
LINC00643Q86TS7 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 GSN-209ENST00000449733 2702 ntTSL 2 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 FANCA-202ENST00000389301 5451 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 ARL13B-210ENST00000535334 3906 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 IST1-203ENST00000378799 4843 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 TIAM1-201ENST00000286827 7200 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 AC024075.2-201ENST00000598112 1473 ntBASIC9.62□□□□□ -0.87
LINC00643Q86TS7 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 AC127383.1-201ENST00000444697 1800 ntBASIC9.62□□□□□ -0.87
LINC00643Q86TS7 CACNA1G-209ENST00000502264 6921 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms