Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CX3CL1P78423 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
CX3CL1P78423 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.6□□□□□ -0.39
CX3CL1P78423 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CX3CL1P78423 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 GRK6P1-201ENST00000400595 1711 ntBASIC12.59□□□□□ -0.39
CX3CL1P78423 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 SSR4P1-203ENST00000599569 2260 ntBASIC12.59□□□□□ -0.39
CX3CL1P78423 LOX-206ENST00000639739 1626 ntTSL 5 BASIC12.59□□□□□ -0.39
CX3CL1P78423 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC12.59□□□□□ -0.39
CX3CL1P78423 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC12.59□□□□□ -0.39
CX3CL1P78423 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CX3CL1P78423 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
CX3CL1P78423 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CX3CL1P78423 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 MIR943-201ENST00000401286 94 ntBASIC12.59□□□□□ -0.39
CX3CL1P78423 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC12.59□□□□□ -0.39
CX3CL1P78423 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC12.59□□□□□ -0.39
CX3CL1P78423 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
CX3CL1P78423 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
CX3CL1P78423 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC12.59□□□□□ -0.39
CX3CL1P78423 AL158211.3-201ENST00000607385 239 ntBASIC12.59□□□□□ -0.39
CX3CL1P78423 TEX28P1-201ENST00000613479 1221 ntBASIC12.59□□□□□ -0.39
CX3CL1P78423 TEX28P2-201ENST00000617764 1221 ntBASIC12.59□□□□□ -0.39
CX3CL1P78423 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC12.59□□□□□ -0.39
CX3CL1P78423 AL033527.5-202ENST00000641632 1098 ntBASIC12.59□□□□□ -0.39
CX3CL1P78423 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CX3CL1P78423 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC12.59□□□□□ -0.39
CX3CL1P78423 AC005089.1-201ENST00000619486 2241 ntBASIC12.59□□□□□ -0.39
CX3CL1P78423 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 TPO-203ENST00000346956 2923 ntTSL 5 BASIC12.59□□□□□ -0.39
CX3CL1P78423 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
CX3CL1P78423 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
CX3CL1P78423 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.59□□□□□ -0.39
CX3CL1P78423 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC12.59□□□□□ -0.39
CX3CL1P78423 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
CX3CL1P78423 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CX3CL1P78423 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC12.59□□□□□ -0.39
CX3CL1P78423 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CL1P78423 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
CX3CL1P78423 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
CX3CL1P78423 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.39
CX3CL1P78423 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.58□□□□□ -0.39
CX3CL1P78423 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.58□□□□□ -0.39
CX3CL1P78423 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
CX3CL1P78423 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CX3CL1P78423 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
CX3CL1P78423 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CX3CL1P78423 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC12.58□□□□□ -0.4
CX3CL1P78423 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
CX3CL1P78423 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CX3CL1P78423 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CX3CL1P78423 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CX3CL1P78423 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
CX3CL1P78423 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CX3CL1P78423 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
CX3CL1P78423 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CX3CL1P78423 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
CX3CL1P78423 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CX3CL1P78423 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CX3CL1P78423 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CX3CL1P78423 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CX3CL1P78423 PNMT-202ENST00000394246 821 ntTSL 2 BASIC12.58□□□□□ -0.4
CX3CL1P78423 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CX3CL1P78423 TREML5P-201ENST00000421694 576 ntBASIC12.58□□□□□ -0.4
CX3CL1P78423 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC12.58□□□□□ -0.4
CX3CL1P78423 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC12.58□□□□□ -0.4
CX3CL1P78423 AC097493.3-201ENST00000509725 367 ntBASIC12.58□□□□□ -0.4
CX3CL1P78423 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC12.58□□□□□ -0.4
CX3CL1P78423 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC12.58□□□□□ -0.4
CX3CL1P78423 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CX3CL1P78423 DUX4L27-201ENST00000554796 1261 ntBASIC12.58□□□□□ -0.4
CX3CL1P78423 HNRNPUP1-201ENST00000554987 333 ntBASIC12.58□□□□□ -0.4
CX3CL1P78423 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms