Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX1P28360 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX1P28360 RARRES2P5-201ENST00000564013 466 ntBASIC14.27□□□□□ -0.13
MSX1P28360 RRP7BP-205ENST00000566851 833 ntBASIC14.27□□□□□ -0.13
MSX1P28360 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.27□□□□□ -0.13
MSX1P28360 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.27□□□□□ -0.13
MSX1P28360 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
MSX1P28360 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
MSX1P28360 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX1P28360 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX1P28360 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX1P28360 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX1P28360 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.27□□□□□ -0.13
MSX1P28360 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX1P28360 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX1P28360 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX1P28360 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.27□□□□□ -0.13
MSX1P28360 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX1P28360 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.26□□□□□ -0.13
MSX1P28360 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
MSX1P28360 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX1P28360 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.26□□□□□ -0.13
MSX1P28360 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 AC092127.1-201ENST00000567093 3455 ntBASIC14.26□□□□□ -0.13
MSX1P28360 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX1P28360 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX1P28360 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 SSR1P1-201ENST00000407630 814 ntBASIC14.26□□□□□ -0.13
MSX1P28360 MIR1909-201ENST00000411312 80 ntBASIC14.26□□□□□ -0.13
MSX1P28360 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
MSX1P28360 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX1P28360 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.26□□□□□ -0.13
MSX1P28360 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.26□□□□□ -0.13
MSX1P28360 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.26□□□□□ -0.13
MSX1P28360 TPRX2P-201ENST00000535362 881 ntBASIC14.26□□□□□ -0.13
MSX1P28360 KRT17P8-201ENST00000540749 863 ntBASIC14.26□□□□□ -0.13
MSX1P28360 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX1P28360 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.26□□□□□ -0.13
MSX1P28360 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX1P28360 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.26□□□□□ -0.13
MSX1P28360 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC14.26□□□□□ -0.13
MSX1P28360 MIR6799-201ENST00000620297 69 ntBASIC14.26□□□□□ -0.13
MSX1P28360 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX1P28360 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX1P28360 AC087481.3-201ENST00000602886 1894 ntBASIC14.26□□□□□ -0.13
MSX1P28360 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.26□□□□□ -0.13
MSX1P28360 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX1P28360 TMBIM7P-203ENST00000641617 1718 ntBASIC14.26□□□□□ -0.13
MSX1P28360 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX1P28360 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX1P28360 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX1P28360 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
MSX1P28360 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.26□□□□□ -0.13
MSX1P28360 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.25□□□□□ -0.13
MSX1P28360 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
MSX1P28360 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
MSX1P28360 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.25□□□□□ -0.13
MSX1P28360 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
MSX1P28360 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.25□□□□□ -0.13
MSX1P28360 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
MSX1P28360 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
MSX1P28360 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.25□□□□□ -0.13
MSX1P28360 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.25□□□□□ -0.13
MSX1P28360 RPS2P32-201ENST00000439199 892 ntBASIC14.25□□□□□ -0.13
MSX1P28360 AC022494.1-201ENST00000466044 728 ntBASIC14.25□□□□□ -0.13
MSX1P28360 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14.25□□□□□ -0.13
MSX1P28360 RAB43P1-201ENST00000561790 589 ntBASIC14.25□□□□□ -0.13
MSX1P28360 AC000095.1-201ENST00000603208 874 ntBASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms