Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 AL512356.2-201ENST00000546955 174 ntBASIC15.23■□□□□ 0.03
PCNAP12004 AL079307.3-201ENST00000556114 283 ntBASIC15.23■□□□□ 0.03
PCNAP12004 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.23■□□□□ 0.03
PCNAP12004 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.23■□□□□ 0.03
PCNAP12004 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.23■□□□□ 0.03
PCNAP12004 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.23■□□□□ 0.03
PCNAP12004 AL136317.3-201ENST00000618497 906 ntBASIC15.23■□□□□ 0.03
PCNAP12004 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.23■□□□□ 0.03
PCNAP12004 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.23■□□□□ 0.03
PCNAP12004 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.23■□□□□ 0.03
PCNAP12004 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
PCNAP12004 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 AL607033.1-201ENST00000623900 1599 ntBASIC15.23■□□□□ 0.03
PCNAP12004 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.22■□□□□ 0.03
PCNAP12004 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.22■□□□□ 0.03
PCNAP12004 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PCNAP12004 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PCNAP12004 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
PCNAP12004 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 SPDYE17-201ENST00000412399 783 ntBASIC15.22■□□□□ 0.03
PCNAP12004 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.22■□□□□ 0.03
PCNAP12004 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.22■□□□□ 0.03
PCNAP12004 AC025678.2-201ENST00000562061 970 ntBASIC15.22■□□□□ 0.03
PCNAP12004 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.22■□□□□ 0.03
PCNAP12004 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PCNAP12004 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.22■□□□□ 0.03
PCNAP12004 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.22■□□□□ 0.03
PCNAP12004 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.22■□□□□ 0.03
PCNAP12004 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
PCNAP12004 KRT8P12-202ENST00000472924 1397 ntBASIC15.22■□□□□ 0.03
PCNAP12004 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCNAP12004 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.21■□□□□ 0.03
PCNAP12004 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.21■□□□□ 0.03
PCNAP12004 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.21■□□□□ 0.03
PCNAP12004 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.21■□□□□ 0.03
PCNAP12004 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PCNAP12004 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.21■□□□□ 0.03
PCNAP12004 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
PCNAP12004 FO393414.2-201ENST00000405153 598 ntBASIC15.21■□□□□ 0.03
PCNAP12004 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.21■□□□□ 0.03
PCNAP12004 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
PCNAP12004 AC125807.1-201ENST00000483097 614 ntBASIC15.21■□□□□ 0.03
PCNAP12004 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.21■□□□□ 0.03
PCNAP12004 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 AP001160.2-201ENST00000596071 487 ntBASIC15.21■□□□□ 0.03
PCNAP12004 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.21■□□□□ 0.03
PCNAP12004 AC097359.3-201ENST00000603982 1210 ntBASIC15.21■□□□□ 0.03
PCNAP12004 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PCNAP12004 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.21■□□□□ 0.03
PCNAP12004 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.21■□□□□ 0.03
PCNAP12004 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCNAP12004 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PCNAP12004 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms