Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 AC099521.3-201ENST00000624251 2938 ntBASIC11.77□□□□□ -0.52
HLA-DQA1P01909 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC11.77□□□□□ -0.52
HLA-DQA1P01909 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 COL6A4P2-202ENST00000504443 2753 ntBASIC11.77□□□□□ -0.53
HLA-DQA1P01909 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 BET1L-202ENST00000332865 533 ntTSL 5 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 VMO1-203ENST00000416307 712 ntTSL 2 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 NUS1P2-201ENST00000417358 873 ntBASIC11.77□□□□□ -0.53
HLA-DQA1P01909 HCG4-201ENST00000418983 998 ntBASIC11.77□□□□□ -0.53
HLA-DQA1P01909 DRAXINP1-201ENST00000437611 948 ntBASIC11.77□□□□□ -0.53
HLA-DQA1P01909 PAWRP1-201ENST00000451083 565 ntBASIC11.77□□□□□ -0.53
HLA-DQA1P01909 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 AC099336.1-202ENST00000602961 463 ntBASIC11.77□□□□□ -0.53
HLA-DQA1P01909 AC138894.3-201ENST00000603787 634 ntBASIC11.77□□□□□ -0.53
HLA-DQA1P01909 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
HLA-DQA1P01909 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 AC089987.1-201ENST00000551654 2209 ntBASIC11.76□□□□□ -0.53
HLA-DQA1P01909 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 AL845331.1-201ENST00000424978 1190 ntBASIC11.76□□□□□ -0.53
HLA-DQA1P01909 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 AP002383.4-201ENST00000442518 975 ntBASIC11.76□□□□□ -0.53
HLA-DQA1P01909 KRT17P6-201ENST00000453795 1220 ntBASIC11.76□□□□□ -0.53
HLA-DQA1P01909 AC091607.1-201ENST00000490318 1060 ntBASIC11.76□□□□□ -0.53
HLA-DQA1P01909 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms