Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SGCEO43556 SSR4P1-203ENST00000599569 2260 ntBASIC13.85□□□□□ -0.19
SGCEO43556 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SGCEO43556 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SGCEO43556 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SGCEO43556 TUBB3P1-201ENST00000405796 1332 ntBASIC13.85□□□□□ -0.19
SGCEO43556 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
SGCEO43556 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SGCEO43556 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SGCEO43556 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SGCEO43556 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.85□□□□□ -0.19
SGCEO43556 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SGCEO43556 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SGCEO43556 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 TMBIM7P-203ENST00000641617 1718 ntBASIC13.84□□□□□ -0.19
SGCEO43556 AC139749.1-202ENST00000617529 3139 ntBASIC13.84□□□□□ -0.19
SGCEO43556 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC13.84□□□□□ -0.19
SGCEO43556 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 AL359258.3-201ENST00000622910 2331 ntBASIC13.84□□□□□ -0.19
SGCEO43556 AC136621.1-201ENST00000624017 2304 ntBASIC13.84□□□□□ -0.19
SGCEO43556 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 HIST3H2BA-201ENST00000436555 524 ntBASIC13.84□□□□□ -0.19
SGCEO43556 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC13.84□□□□□ -0.19
SGCEO43556 URGCP-206ENST00000446958 365 ntTSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 PTK7-212ENST00000476760 902 ntTSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 AC067863.1-201ENST00000494933 530 ntBASIC13.84□□□□□ -0.19
SGCEO43556 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 GPER1-207ENST00000619052 571 ntTSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 AC007686.3-201ENST00000619017 3487 ntBASIC13.84□□□□□ -0.19
SGCEO43556 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
SGCEO43556 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC13.84□□□□□ -0.19
SGCEO43556 AC022532.1-201ENST00000624563 1728 ntBASIC13.84□□□□□ -0.19
SGCEO43556 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 AC090616.6-203ENST00000579186 1945 ntBASIC13.84□□□□□ -0.19
SGCEO43556 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.84□□□□□ -0.19
SGCEO43556 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SGCEO43556 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
SGCEO43556 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
SGCEO43556 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.83□□□□□ -0.19
SGCEO43556 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.83□□□□□ -0.19
SGCEO43556 AC073347.1-201ENST00000421633 2643 ntBASIC13.83□□□□□ -0.19
SGCEO43556 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SGCEO43556 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SGCEO43556 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SGCEO43556 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.83□□□□□ -0.2
SGCEO43556 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SGCEO43556 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.83□□□□□ -0.2
SGCEO43556 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SGCEO43556 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SGCEO43556 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.83□□□□□ -0.2
SGCEO43556 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC13.83□□□□□ -0.2
SGCEO43556 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SGCEO43556 KLK8-202ENST00000320838 456 ntTSL 5 BASIC13.83□□□□□ -0.2
SGCEO43556 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
SGCEO43556 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SGCEO43556 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
SGCEO43556 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
SGCEO43556 AL080243.2-201ENST00000418783 582 ntBASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms