Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM38O00635 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM38O00635 AC136621.1-201ENST00000624017 2304 ntBASIC15.71■□□□□ 0.11
TRIM38O00635 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM38O00635 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM38O00635 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
TRIM38O00635 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM38O00635 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM38O00635 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM38O00635 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM38O00635 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM38O00635 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.71■□□□□ 0.11
TRIM38O00635 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
TRIM38O00635 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM38O00635 TTTY23B-201ENST00000442790 549 ntBASIC15.71■□□□□ 0.11
TRIM38O00635 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM38O00635 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM38O00635 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM38O00635 RAB43P1-201ENST00000561790 589 ntBASIC15.71■□□□□ 0.11
TRIM38O00635 AC106886.1-201ENST00000568660 600 ntBASIC15.71■□□□□ 0.11
TRIM38O00635 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.71■□□□□ 0.11
TRIM38O00635 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM38O00635 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM38O00635 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.71■□□□□ 0.11
TRIM38O00635 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.71■□□□□ 0.11
TRIM38O00635 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM38O00635 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
TRIM38O00635 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM38O00635 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM38O00635 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM38O00635 AL136982.4-201ENST00000437689 1740 ntBASIC15.71■□□□□ 0.1
TRIM38O00635 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM38O00635 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
TRIM38O00635 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
TRIM38O00635 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM38O00635 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.7■□□□□ 0.1
TRIM38O00635 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.7■□□□□ 0.1
TRIM38O00635 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
TRIM38O00635 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM38O00635 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM38O00635 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM38O00635 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
TRIM38O00635 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM38O00635 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
TRIM38O00635 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
TRIM38O00635 MIR658-201ENST00000385210 100 ntBASIC15.7■□□□□ 0.1
TRIM38O00635 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.7■□□□□ 0.1
TRIM38O00635 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.7■□□□□ 0.1
TRIM38O00635 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.7■□□□□ 0.1
TRIM38O00635 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.7■□□□□ 0.1
TRIM38O00635 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.7■□□□□ 0.1
TRIM38O00635 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.7■□□□□ 0.1
TRIM38O00635 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.7■□□□□ 0.1
TRIM38O00635 AC092337.1-201ENST00000568699 1129 ntBASIC15.7■□□□□ 0.1
TRIM38O00635 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.7■□□□□ 0.1
TRIM38O00635 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
TRIM38O00635 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
TRIM38O00635 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.7■□□□□ 0.1
TRIM38O00635 AC093726.1-201ENST00000608064 963 ntBASIC15.7■□□□□ 0.1
TRIM38O00635 MIR6805-201ENST00000615055 62 ntBASIC15.7■□□□□ 0.1
TRIM38O00635 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
TRIM38O00635 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
TRIM38O00635 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.7■□□□□ 0.1
TRIM38O00635 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM38O00635 AL109954.1-202ENST00000564051 2148 ntBASIC15.7■□□□□ 0.1
TRIM38O00635 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM38O00635 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.7■□□□□ 0.1
TRIM38O00635 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM38O00635 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.69■□□□□ 0.1
TRIM38O00635 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM38O00635 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM38O00635 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
TRIM38O00635 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
TRIM38O00635 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM38O00635 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM38O00635 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM38O00635 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM38O00635 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.69■□□□□ 0.1
TRIM38O00635 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM38O00635 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM38O00635 HIST3H2BA-201ENST00000436555 524 ntBASIC15.69■□□□□ 0.1
TRIM38O00635 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM38O00635 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM38O00635 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms