Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 AC243562.2-201ENST00000561247 970 ntBASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 AL512343.1-201ENST00000605837 169 ntBASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 AP005117.1-202ENST00000581724 1908 ntBASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 NFIC-211ENST00000641145 8399 ntBASIC15.34■□□□□ 0.05
TMX2-CTNND1H3BSU7 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
TMX2-CTNND1H3BSU7 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
TMX2-CTNND1H3BSU7 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TMX2-CTNND1H3BSU7 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
TMX2-CTNND1H3BSU7 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.05
TMX2-CTNND1H3BSU7 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TMX2-CTNND1H3BSU7 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
TMX2-CTNND1H3BSU7 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
TMX2-CTNND1H3BSU7 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
TMX2-CTNND1H3BSU7 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 HIST3H2BA-201ENST00000436555 524 ntBASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 RN7SL399P-201ENST00000471648 279 ntBASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TMX2-CTNND1H3BSU7 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 AL162726.2-201ENST00000438986 1017 ntBASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 COX11-210ENST00000639671 696 ntBASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms