Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 CTBP2P5-201ENST00000454986 1264 ntBASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 AC120045.2-201ENST00000567334 178 ntBASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 ME2P1-201ENST00000426028 1970 ntBASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SSX2IPQ9Y2D8 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 PDIA3P1-201ENST00000471856 1510 ntBASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 APOC3-202ENST00000375345 604 ntTSL 5 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SSX2IPQ9Y2D8 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.77■□□□□ 0.27
SSX2IPQ9Y2D8 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 FO681548.1-201ENST00000455617 1132 ntBASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 KRT18P43-201ENST00000469825 1281 ntBASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 AP001063.1-201ENST00000568332 529 ntBASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.76■□□□□ 0.27
SSX2IPQ9Y2D8 AC000095.1-201ENST00000603208 874 ntBASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms