Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 MIR3907-201ENST00000579424 151 ntBASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 CLUHP2-201ENST00000426660 1303 ntBASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 OR6D1P-203ENST00000641209 4860 ntBASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 CRCP-204ENST00000398684 492 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 RPL17P11-201ENST00000417593 544 ntBASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 HLA-K-203ENST00000430151 1046 ntBASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 SUPT4H1P2-201ENST00000501248 353 ntBASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 AC134698.3-201ENST00000523880 214 ntBASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 RN7SL774P-201ENST00000577467 290 ntBASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 AL645939.5-201ENST00000606834 243 ntBASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC87Q9NVE4 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 RN7SL11P-201ENST00000471305 293 ntBASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 AC005740.2-201ENST00000511085 419 ntBASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 KRT8P29-201ENST00000420409 1371 ntBASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC87Q9NVE4 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 DPM3-202ENST00000368399 517 ntBASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 MESTP3-201ENST00000503460 968 ntBASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 DUX4L47-201ENST00000566374 394 ntBASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC87Q9NVE4 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms