Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC18.22■□□□□ 0.51
NUP88Q99567 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUP88Q99567 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUP88Q99567 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.22■□□□□ 0.51
NUP88Q99567 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC18.21■□□□□ 0.51
NUP88Q99567 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.21■□□□□ 0.51
NUP88Q99567 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.21■□□□□ 0.51
NUP88Q99567 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
NUP88Q99567 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 SOCS2P1-201ENST00000417727 557 ntBASIC18.21■□□□□ 0.51
NUP88Q99567 ACTG1P3-201ENST00000431775 1114 ntBASIC18.21■□□□□ 0.51
NUP88Q99567 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC18.21■□□□□ 0.51
NUP88Q99567 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.21■□□□□ 0.51
NUP88Q99567 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.21■□□□□ 0.51
NUP88Q99567 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
NUP88Q99567 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
NUP88Q99567 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC18.21■□□□□ 0.51
NUP88Q99567 CLUHP6-201ENST00000580789 941 ntBASIC18.21■□□□□ 0.51
NUP88Q99567 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC18.21■□□□□ 0.51
NUP88Q99567 AC233724.13-201ENST00000598383 410 ntBASIC18.21■□□□□ 0.51
NUP88Q99567 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC18.21■□□□□ 0.51
NUP88Q99567 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.21■□□□□ 0.51
NUP88Q99567 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.21■□□□□ 0.51
NUP88Q99567 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.21■□□□□ 0.51
NUP88Q99567 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.21■□□□□ 0.51
NUP88Q99567 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUP88Q99567 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
NUP88Q99567 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
NUP88Q99567 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
NUP88Q99567 CYP2AB1P-202ENST00000454440 1456 ntBASIC18.2■□□□□ 0.5
NUP88Q99567 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUP88Q99567 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUP88Q99567 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUP88Q99567 NORAD-201ENST00000565493 5339 ntBASIC18.2■□□□□ 0.5
NUP88Q99567 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUP88Q99567 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.2■□□□□ 0.5
NUP88Q99567 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUP88Q99567 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
NUP88Q99567 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.2■□□□□ 0.5
NUP88Q99567 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC18.2■□□□□ 0.5
NUP88Q99567 BCRP2-202ENST00000447763 634 ntBASIC18.2■□□□□ 0.5
NUP88Q99567 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC18.2■□□□□ 0.5
NUP88Q99567 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.2■□□□□ 0.5
NUP88Q99567 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC18.2■□□□□ 0.5
NUP88Q99567 BCRP6-201ENST00000510112 632 ntBASIC18.2■□□□□ 0.5
NUP88Q99567 BCRP7-201ENST00000511549 544 ntBASIC18.2■□□□□ 0.5
NUP88Q99567 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.2■□□□□ 0.5
NUP88Q99567 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC18.2■□□□□ 0.5
NUP88Q99567 AC005252.2-201ENST00000624630 1141 ntBASIC18.2■□□□□ 0.5
NUP88Q99567 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUP88Q99567 AC112504.1-201ENST00000623415 1841 ntBASIC18.2■□□□□ 0.5
NUP88Q99567 AL603832.2-201ENST00000566195 2125 ntBASIC18.2■□□□□ 0.5
NUP88Q99567 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUP88Q99567 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUP88Q99567 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
NUP88Q99567 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUP88Q99567 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUP88Q99567 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.2■□□□□ 0.5
NUP88Q99567 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.19■□□□□ 0.5
NUP88Q99567 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NUP88Q99567 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC18.19■□□□□ 0.5
NUP88Q99567 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.19■□□□□ 0.5
NUP88Q99567 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.19■□□□□ 0.5
NUP88Q99567 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
NUP88Q99567 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
NUP88Q99567 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NUP88Q99567 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NUP88Q99567 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.19■□□□□ 0.5
NUP88Q99567 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
NUP88Q99567 RPL28-203ENST00000428193 573 ntTSL 2 BASIC18.19■□□□□ 0.5
NUP88Q99567 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.19■□□□□ 0.5
NUP88Q99567 RPS2P32-201ENST00000439199 892 ntBASIC18.19■□□□□ 0.5
NUP88Q99567 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NUP88Q99567 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NUP88Q99567 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.19■□□□□ 0.5
NUP88Q99567 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
NUP88Q99567 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC18.19■□□□□ 0.5
NUP88Q99567 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
NUP88Q99567 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC18.19■□□□□ 0.5
NUP88Q99567 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NUP88Q99567 RPL28-207ENST00000558815 616 ntTSL 2 BASIC18.19■□□□□ 0.5
NUP88Q99567 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC18.19■□□□□ 0.5
NUP88Q99567 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18.19■□□□□ 0.5
NUP88Q99567 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.19■□□□□ 0.5
NUP88Q99567 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms