Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 KRT18P58-201ENST00000527480 1120 ntBASIC11.72□□□□□ -0.53
LINC00477Q96M19 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 CELP-203ENST00000624767 2414 ntTSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 ZBED1P1-201ENST00000502364 1930 ntBASIC11.71□□□□□ -0.53
LINC00477Q96M19 RPS19-201ENST00000221975 500 ntTSL 3 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 ALG1L8P-201ENST00000533887 760 ntBASIC11.71□□□□□ -0.53
LINC00477Q96M19 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 AC105021.1-202ENST00000570572 669 ntBASIC11.71□□□□□ -0.53
LINC00477Q96M19 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 AC018529.1-201ENST00000613063 361 ntBASIC11.71□□□□□ -0.53
LINC00477Q96M19 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00477Q96M19 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC11.71□□□□□ -0.53
LINC00477Q96M19 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC11.71□□□□□ -0.54
LINC00477Q96M19 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC11.71□□□□□ -0.54
LINC00477Q96M19 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC11.71□□□□□ -0.54
LINC00477Q96M19 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC11.71□□□□□ -0.54
LINC00477Q96M19 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC11.71□□□□□ -0.54
LINC00477Q96M19 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC11.71□□□□□ -0.54
LINC00477Q96M19 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC11.71□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms