Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 GZMB-202ENST00000382540 816 ntTSL 5 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 ACTG1P3-201ENST00000431775 1114 ntBASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 CLUHP6-201ENST00000580789 941 ntBASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NKX2-3Q8TAU0 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 RPL7P3-201ENST00000441388 714 ntBASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 KRT8P13-201ENST00000463294 1010 ntBASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 RNA5SP423-201ENST00000517127 109 ntBASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 AC120045.2-201ENST00000567334 178 ntBASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 AC005252.2-201ENST00000624630 1141 ntBASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 HNRNPA1P48-201ENST00000562726 1377 ntBASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NKX2-3Q8TAU0 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 AC126177.1-201ENST00000547829 2218 ntBASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 INTS4P2-202ENST00000614726 2019 ntBASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 KRT8P22-201ENST00000562317 1415 ntBASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms