Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 KRT8P21-201ENST00000430398 1491 ntBASIC10.59□□□□□ -0.71
CSMD3Q7Z407 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CSMD3Q7Z407 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 RN7SL67P-201ENST00000492147 296 ntBASIC10.58□□□□□ -0.72
CSMD3Q7Z407 HLA-J-204ENST00000495278 958 ntBASIC10.58□□□□□ -0.72
CSMD3Q7Z407 SCARNA21-201ENST00000517026 139 ntBASIC10.58□□□□□ -0.72
CSMD3Q7Z407 AC020922.3-201ENST00000595064 547 ntBASIC10.58□□□□□ -0.72
CSMD3Q7Z407 IRF3-215ENST00000596822 823 ntTSL 3 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 AC144522.1-201ENST00000625111 1658 ntBASIC10.58□□□□□ -0.72
CSMD3Q7Z407 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 MIR5196-201ENST00000578146 115 ntBASIC10.58□□□□□ -0.72
CSMD3Q7Z407 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 TBC1D3J-201ENST00000620719 1426 ntBASIC10.58□□□□□ -0.72
CSMD3Q7Z407 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 SAMD11P1-201ENST00000571429 661 ntBASIC10.58□□□□□ -0.72
CSMD3Q7Z407 HPN-206ENST00000597419 1212 ntTSL 5 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 AC012044.1-201ENST00000603431 297 ntBASIC10.58□□□□□ -0.72
CSMD3Q7Z407 AP003392.6-201ENST00000607709 325 ntBASIC10.58□□□□□ -0.72
CSMD3Q7Z407 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CSMD3Q7Z407 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 SP100-205ENST00000409824 1802 ntTSL 5 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 AMT-224ENST00000635808 1610 ntTSL 5 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 AL118516.1-201ENST00000564152 670 ntBASIC10.57□□□□□ -0.72
CSMD3Q7Z407 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 AC013726.1-201ENST00000563747 2285 ntBASIC10.57□□□□□ -0.72
CSMD3Q7Z407 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC10.57□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms