Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 AL133267.1-201ENST00000398220 340 ntBASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 AL589987.1-201ENST00000453380 819 ntBASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 AC023310.3-201ENST00000557027 670 ntBASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 AC100756.1-201ENST00000562736 682 ntBASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 AC138749.3-201ENST00000567691 622 ntBASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 AC138761.1-201ENST00000584393 385 ntBASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 AC116165.1-201ENST00000611806 668 ntBASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NUP54Q7Z3B4 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 AC105250.1-201ENST00000509378 2057 ntBASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 AC055876.2-201ENST00000531834 546 ntBASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 AC099568.2-201ENST00000609194 695 ntBASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 SLC7A15P-201ENST00000424028 1363 ntBASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
NUP54Q7Z3B4 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms