Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 AC023908.3-201ENST00000564211 3047 ntBASIC12.62□□□□□ -0.39
CX3CL1P78423 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 AC026748.1-201ENST00000624349 3251 ntBASIC12.61□□□□□ -0.39
CX3CL1P78423 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC12.61□□□□□ -0.39
CX3CL1P78423 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC12.61□□□□□ -0.39
CX3CL1P78423 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.61□□□□□ -0.39
CX3CL1P78423 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
CX3CL1P78423 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CX3CL1P78423 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CX3CL1P78423 FO538757.1-201ENST00000623083 1397 ntBASIC12.61□□□□□ -0.39
CX3CL1P78423 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC12.61□□□□□ -0.39
CX3CL1P78423 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC12.61□□□□□ -0.39
CX3CL1P78423 AC007292.2-201ENST00000593524 1812 ntBASIC12.61□□□□□ -0.39
CX3CL1P78423 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 RAC2-202ENST00000401529 569 ntTSL 4 BASIC12.61□□□□□ -0.39
CX3CL1P78423 HLA-DRB6-201ENST00000411500 1235 ntBASIC12.61□□□□□ -0.39
CX3CL1P78423 AL080243.2-201ENST00000418783 582 ntBASIC12.61□□□□□ -0.39
CX3CL1P78423 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC12.61□□□□□ -0.39
CX3CL1P78423 AL645939.2-201ENST00000427340 991 ntBASIC12.61□□□□□ -0.39
CX3CL1P78423 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC12.61□□□□□ -0.39
CX3CL1P78423 HIST3H2BA-201ENST00000436555 524 ntBASIC12.61□□□□□ -0.39
CX3CL1P78423 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 AC092183.1-201ENST00000469884 875 ntBASIC12.61□□□□□ -0.39
CX3CL1P78423 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC12.61□□□□□ -0.39
CX3CL1P78423 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC12.61□□□□□ -0.39
CX3CL1P78423 RPL28-205ENST00000558131 444 ntTSL 5 BASIC12.61□□□□□ -0.39
CX3CL1P78423 MIR4313-201ENST00000580760 101 ntBASIC12.61□□□□□ -0.39
CX3CL1P78423 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC12.61□□□□□ -0.39
CX3CL1P78423 SPDYE12P-201ENST00000618416 771 ntBASIC12.61□□□□□ -0.39
CX3CL1P78423 MIR6069-201ENST00000620069 79 ntBASIC12.61□□□□□ -0.39
CX3CL1P78423 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.61□□□□□ -0.39
CX3CL1P78423 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC12.61□□□□□ -0.39
CX3CL1P78423 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC12.61□□□□□ -0.39
CX3CL1P78423 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
CX3CL1P78423 SBF1P1-201ENST00000444527 5631 ntBASIC12.61□□□□□ -0.39
CX3CL1P78423 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC12.61□□□□□ -0.39
CX3CL1P78423 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CL1P78423 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.6□□□□□ -0.39
CX3CL1P78423 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC12.6□□□□□ -0.39
CX3CL1P78423 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC12.6□□□□□ -0.39
CX3CL1P78423 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 POLL-206ENST00000370172 2308 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CL1P78423 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
CX3CL1P78423 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CL1P78423 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CX3CL1P78423 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CX3CL1P78423 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.6□□□□□ -0.39
CX3CL1P78423 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
CX3CL1P78423 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC12.6□□□□□ -0.39
CX3CL1P78423 PTK7-212ENST00000476760 902 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CL1P78423 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC12.6□□□□□ -0.39
CX3CL1P78423 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CL1P78423 AC027369.6-201ENST00000525520 931 ntBASIC12.6□□□□□ -0.39
CX3CL1P78423 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC12.6□□□□□ -0.39
CX3CL1P78423 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC12.6□□□□□ -0.39
CX3CL1P78423 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC12.6□□□□□ -0.39
CX3CL1P78423 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC12.6□□□□□ -0.39
CX3CL1P78423 AL138828.2-201ENST00000615812 383 ntBASIC12.6□□□□□ -0.39
CX3CL1P78423 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CL1P78423 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CL1P78423 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms