Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.18■□□□□ 0.02
YBX1P67809 SPTLC1P1-201ENST00000447199 261 ntBASIC15.18■□□□□ 0.02
YBX1P67809 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.18■□□□□ 0.02
YBX1P67809 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.18■□□□□ 0.02
YBX1P67809 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.18■□□□□ 0.02
YBX1P67809 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.18■□□□□ 0.02
YBX1P67809 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.18■□□□□ 0.02
YBX1P67809 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.18■□□□□ 0.02
YBX1P67809 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.18■□□□□ 0.02
YBX1P67809 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.18■□□□□ 0.02
YBX1P67809 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC15.18■□□□□ 0.02
YBX1P67809 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.18■□□□□ 0.02
YBX1P67809 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.18■□□□□ 0.02
YBX1P67809 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
YBX1P67809 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
YBX1P67809 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
YBX1P67809 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.17■□□□□ 0.02
YBX1P67809 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
YBX1P67809 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.17■□□□□ 0.02
YBX1P67809 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.17■□□□□ 0.02
YBX1P67809 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.17■□□□□ 0.02
YBX1P67809 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.17■□□□□ 0.02
YBX1P67809 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.17■□□□□ 0.02
YBX1P67809 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.17■□□□□ 0.02
YBX1P67809 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.17■□□□□ 0.02
YBX1P67809 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.17■□□□□ 0.02
YBX1P67809 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.17■□□□□ 0.02
YBX1P67809 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.17■□□□□ 0.02
YBX1P67809 SPDYE19P-201ENST00000338590 713 ntBASIC15.17■□□□□ 0.02
YBX1P67809 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.17■□□□□ 0.02
YBX1P67809 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.17■□□□□ 0.02
YBX1P67809 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.17■□□□□ 0.02
YBX1P67809 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.17■□□□□ 0.02
YBX1P67809 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.17■□□□□ 0.02
YBX1P67809 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
YBX1P67809 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
YBX1P67809 AC023310.3-201ENST00000557027 670 ntBASIC15.17■□□□□ 0.02
YBX1P67809 AC100756.1-201ENST00000562736 682 ntBASIC15.17■□□□□ 0.02
YBX1P67809 AC138749.3-201ENST00000567691 622 ntBASIC15.17■□□□□ 0.02
YBX1P67809 AC116165.1-201ENST00000611806 668 ntBASIC15.17■□□□□ 0.02
YBX1P67809 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.17■□□□□ 0.02
YBX1P67809 AC008761.3-201ENST00000624803 892 ntBASIC15.17■□□□□ 0.02
YBX1P67809 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.17■□□□□ 0.02
YBX1P67809 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
YBX1P67809 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
YBX1P67809 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.17■□□□□ 0.02
YBX1P67809 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.17■□□□□ 0.02
YBX1P67809 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
YBX1P67809 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
YBX1P67809 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC15.17■□□□□ 0.02
YBX1P67809 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
YBX1P67809 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.16■□□□□ 0.02
YBX1P67809 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 KRT8P44-201ENST00000441609 1350 ntBASIC15.16■□□□□ 0.02
YBX1P67809 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms