Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.75□□□□□ -0.21
CX3CR1P49238 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CX3CR1P49238 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.74□□□□□ -0.21
CX3CR1P49238 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.74□□□□□ -0.21
CX3CR1P49238 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 KRT8P44-201ENST00000441609 1350 ntBASIC13.74□□□□□ -0.21
CX3CR1P49238 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
CX3CR1P49238 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 AC148477.4-201ENST00000613430 1793 ntBASIC13.74□□□□□ -0.21
CX3CR1P49238 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CX3CR1P49238 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CX3CR1P49238 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.74□□□□□ -0.21
CX3CR1P49238 SPDYE7P-202ENST00000420373 878 ntBASIC13.74□□□□□ -0.21
CX3CR1P49238 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC13.74□□□□□ -0.21
CX3CR1P49238 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC13.74□□□□□ -0.21
CX3CR1P49238 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC13.74□□□□□ -0.21
CX3CR1P49238 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.74□□□□□ -0.21
CX3CR1P49238 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC13.74□□□□□ -0.21
CX3CR1P49238 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC13.74□□□□□ -0.21
CX3CR1P49238 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC13.74□□□□□ -0.21
CX3CR1P49238 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.74□□□□□ -0.21
CX3CR1P49238 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.74□□□□□ -0.21
CX3CR1P49238 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 AC126365.1-201ENST00000578585 1514 ntBASIC13.74□□□□□ -0.21
CX3CR1P49238 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.74□□□□□ -0.21
CX3CR1P49238 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CX3CR1P49238 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
CX3CR1P49238 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.73□□□□□ -0.21
CX3CR1P49238 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 KRT8P12-202ENST00000472924 1397 ntBASIC13.73□□□□□ -0.21
CX3CR1P49238 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 GOLGA6L17P-202ENST00000614358 1398 ntBASIC13.73□□□□□ -0.21
CX3CR1P49238 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
CX3CR1P49238 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.73□□□□□ -0.21
CX3CR1P49238 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.73□□□□□ -0.21
CX3CR1P49238 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
CX3CR1P49238 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
CX3CR1P49238 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.73□□□□□ -0.21
CX3CR1P49238 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC13.73□□□□□ -0.21
CX3CR1P49238 CNN2P11-201ENST00000429351 262 ntBASIC13.73□□□□□ -0.21
CX3CR1P49238 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC13.73□□□□□ -0.21
CX3CR1P49238 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC13.73□□□□□ -0.21
CX3CR1P49238 HIST3H2BA-201ENST00000436555 524 ntBASIC13.73□□□□□ -0.21
CX3CR1P49238 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC13.73□□□□□ -0.21
CX3CR1P49238 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.73□□□□□ -0.21
CX3CR1P49238 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CX3CR1P49238 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
CX3CR1P49238 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
CX3CR1P49238 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC13.73□□□□□ -0.21
CX3CR1P49238 AP001059.3-201ENST00000619053 235 ntBASIC13.73□□□□□ -0.21
CX3CR1P49238 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
CX3CR1P49238 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 AC091951.1-201ENST00000512854 2465 ntBASIC13.73□□□□□ -0.21
CX3CR1P49238 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CX3CR1P49238 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 TCAF2P1-201ENST00000291129 2421 ntBASIC13.73□□□□□ -0.21
CX3CR1P49238 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CR1P49238 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
CX3CR1P49238 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
CX3CR1P49238 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms