Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.72□□□□□ -0.05
RFX3P48380 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.72□□□□□ -0.05
RFX3P48380 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
RFX3P48380 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.72□□□□□ -0.05
RFX3P48380 AC067750.1-201ENST00000608826 6545 ntBASIC14.72□□□□□ -0.05
RFX3P48380 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
RFX3P48380 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
RFX3P48380 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
RFX3P48380 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.71□□□□□ -0.05
RFX3P48380 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
RFX3P48380 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
RFX3P48380 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.71□□□□□ -0.05
RFX3P48380 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
RFX3P48380 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
RFX3P48380 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
RFX3P48380 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 TREML5P-201ENST00000421694 576 ntBASIC14.71□□□□□ -0.05
RFX3P48380 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.71□□□□□ -0.05
RFX3P48380 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.71□□□□□ -0.05
RFX3P48380 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.71□□□□□ -0.05
RFX3P48380 AC027369.6-201ENST00000525520 931 ntBASIC14.71□□□□□ -0.05
RFX3P48380 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.71□□□□□ -0.05
RFX3P48380 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.71□□□□□ -0.05
RFX3P48380 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.71□□□□□ -0.05
RFX3P48380 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.71□□□□□ -0.05
RFX3P48380 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
RFX3P48380 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.71□□□□□ -0.05
RFX3P48380 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
RFX3P48380 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
RFX3P48380 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
RFX3P48380 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
RFX3P48380 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
RFX3P48380 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
RFX3P48380 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RFX3P48380 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RFX3P48380 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX3P48380 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX3P48380 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.7□□□□□ -0.06
RFX3P48380 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
RFX3P48380 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
RFX3P48380 AC136621.1-201ENST00000624017 2304 ntBASIC14.7□□□□□ -0.06
RFX3P48380 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
RFX3P48380 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.7□□□□□ -0.06
RFX3P48380 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
RFX3P48380 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.7□□□□□ -0.06
RFX3P48380 MIR943-201ENST00000401286 94 ntBASIC14.7□□□□□ -0.06
RFX3P48380 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
RFX3P48380 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 AC067863.1-201ENST00000494933 530 ntBASIC14.7□□□□□ -0.06
RFX3P48380 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.7□□□□□ -0.06
RFX3P48380 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
RFX3P48380 AC073592.8-201ENST00000624126 511 ntBASIC14.7□□□□□ -0.06
RFX3P48380 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.7□□□□□ -0.06
RFX3P48380 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.7□□□□□ -0.06
RFX3P48380 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.7□□□□□ -0.06
RFX3P48380 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX3P48380 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX3P48380 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
RFX3P48380 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.7□□□□□ -0.06
RFX3P48380 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
RFX3P48380 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX3P48380 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX3P48380 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX3P48380 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
RFX3P48380 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.69□□□□□ -0.06
RFX3P48380 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms