Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 CICP24-201ENST00000605464 2705 ntBASIC14.72□□□□□ -0.05
SOX3P41225 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.72□□□□□ -0.05
SOX3P41225 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.72□□□□□ -0.05
SOX3P41225 AC138035.3-201ENST00000622706 2791 ntBASIC14.72□□□□□ -0.05
SOX3P41225 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
SOX3P41225 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.71□□□□□ -0.05
SOX3P41225 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
SOX3P41225 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.71□□□□□ -0.05
SOX3P41225 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
SOX3P41225 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SOX3P41225 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SOX3P41225 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.71□□□□□ -0.05
SOX3P41225 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.71□□□□□ -0.05
SOX3P41225 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SOX3P41225 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.71□□□□□ -0.05
SOX3P41225 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
SOX3P41225 SPTLC1P1-201ENST00000447199 261 ntBASIC14.71□□□□□ -0.05
SOX3P41225 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.71□□□□□ -0.05
SOX3P41225 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.71□□□□□ -0.05
SOX3P41225 AC104794.3-201ENST00000566840 1248 ntBASIC14.71□□□□□ -0.05
SOX3P41225 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.71□□□□□ -0.05
SOX3P41225 AC004233.3-201ENST00000607794 1269 ntBASIC14.71□□□□□ -0.05
SOX3P41225 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.71□□□□□ -0.05
SOX3P41225 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.71□□□□□ -0.05
SOX3P41225 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.71□□□□□ -0.05
SOX3P41225 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.71□□□□□ -0.05
SOX3P41225 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.71□□□□□ -0.05
SOX3P41225 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.71□□□□□ -0.05
SOX3P41225 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.71□□□□□ -0.05
SOX3P41225 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.71□□□□□ -0.05
SOX3P41225 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SOX3P41225 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.71□□□□□ -0.05
SOX3P41225 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SOX3P41225 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.71□□□□□ -0.06
SOX3P41225 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SOX3P41225 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SOX3P41225 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.71□□□□□ -0.06
SOX3P41225 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SOX3P41225 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.7□□□□□ -0.06
SOX3P41225 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.7□□□□□ -0.06
SOX3P41225 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.7□□□□□ -0.06
SOX3P41225 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
SOX3P41225 AC020658.6-201ENST00000623564 1870 ntBASIC14.7□□□□□ -0.06
SOX3P41225 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
SOX3P41225 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.7□□□□□ -0.06
SOX3P41225 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
SOX3P41225 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.7□□□□□ -0.06
SOX3P41225 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.7□□□□□ -0.06
SOX3P41225 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.7□□□□□ -0.06
SOX3P41225 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.7□□□□□ -0.06
SOX3P41225 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.7□□□□□ -0.06
SOX3P41225 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.7□□□□□ -0.06
SOX3P41225 SPDYE18-201ENST00000510091 1050 ntBASIC14.7□□□□□ -0.06
SOX3P41225 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
SOX3P41225 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.7□□□□□ -0.06
SOX3P41225 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
SOX3P41225 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.7□□□□□ -0.06
SOX3P41225 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms