Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL18A1P39060 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL18A1P39060 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL18A1P39060 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
COL18A1P39060 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC19.96■□□□□ 0.79
COL18A1P39060 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC19.96■□□□□ 0.79
COL18A1P39060 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
COL18A1P39060 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC19.96■□□□□ 0.79
COL18A1P39060 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC19.96■□□□□ 0.79
COL18A1P39060 AC242376.2-201ENST00000619355 883 ntBASIC19.96■□□□□ 0.79
COL18A1P39060 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC19.96■□□□□ 0.79
COL18A1P39060 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.96■□□□□ 0.79
COL18A1P39060 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.96■□□□□ 0.79
COL18A1P39060 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL18A1P39060 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.96■□□□□ 0.79
COL18A1P39060 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL18A1P39060 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL18A1P39060 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL18A1P39060 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC19.95■□□□□ 0.78
COL18A1P39060 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC19.95■□□□□ 0.78
COL18A1P39060 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC19.95■□□□□ 0.78
COL18A1P39060 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC19.95■□□□□ 0.78
COL18A1P39060 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC19.95■□□□□ 0.78
COL18A1P39060 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC19.95■□□□□ 0.78
COL18A1P39060 AC092171.5-201ENST00000608012 942 ntBASIC19.95■□□□□ 0.78
COL18A1P39060 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
COL18A1P39060 CMC2-224ENST00000630396 481 ntTSL 5 BASIC19.95■□□□□ 0.78
COL18A1P39060 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL18A1P39060 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL18A1P39060 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL18A1P39060 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC19.95■□□□□ 0.78
COL18A1P39060 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL18A1P39060 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL18A1P39060 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL18A1P39060 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL18A1P39060 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL18A1P39060 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL18A1P39060 SCARNA21-201ENST00000517026 139 ntBASIC19.95■□□□□ 0.78
COL18A1P39060 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC19.95■□□□□ 0.78
COL18A1P39060 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC19.95■□□□□ 0.78
COL18A1P39060 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC19.95■□□□□ 0.78
COL18A1P39060 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC19.95■□□□□ 0.78
COL18A1P39060 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC19.95■□□□□ 0.78
COL18A1P39060 AC007881.3-201ENST00000608897 607 ntBASIC19.95■□□□□ 0.78
COL18A1P39060 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC19.95■□□□□ 0.78
COL18A1P39060 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.95■□□□□ 0.78
COL18A1P39060 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC19.95■□□□□ 0.78
COL18A1P39060 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC19.95■□□□□ 0.78
COL18A1P39060 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL18A1P39060 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
COL18A1P39060 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL18A1P39060 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL18A1P39060 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC19.94■□□□□ 0.78
COL18A1P39060 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL18A1P39060 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.94■□□□□ 0.78
COL18A1P39060 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL18A1P39060 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC19.94■□□□□ 0.78
COL18A1P39060 RPL13AP19-201ENST00000434320 584 ntBASIC19.94■□□□□ 0.78
COL18A1P39060 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC19.94■□□□□ 0.78
COL18A1P39060 RN7SL8P-201ENST00000461771 266 ntBASIC19.94■□□□□ 0.78
COL18A1P39060 AC006122.1-201ENST00000493323 440 ntBASIC19.94■□□□□ 0.78
COL18A1P39060 TMCO5B-205ENST00000530020 894 ntBASIC19.94■□□□□ 0.78
COL18A1P39060 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC19.94■□□□□ 0.78
COL18A1P39060 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL18A1P39060 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC19.94■□□□□ 0.78
COL18A1P39060 AL109837.1-201ENST00000603272 613 ntBASIC19.94■□□□□ 0.78
COL18A1P39060 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL18A1P39060 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
COL18A1P39060 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
COL18A1P39060 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL18A1P39060 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC19.94■□□□□ 0.78
COL18A1P39060 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL18A1P39060 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.94■□□□□ 0.78
COL18A1P39060 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL18A1P39060 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
COL18A1P39060 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL18A1P39060 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
COL18A1P39060 API5-202ENST00000420461 2009 ntTSL 2 BASIC19.94■□□□□ 0.78
COL18A1P39060 AL359258.3-201ENST00000622910 2331 ntBASIC19.94■□□□□ 0.78
COL18A1P39060 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.94■□□□□ 0.78
COL18A1P39060 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL18A1P39060 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL18A1P39060 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
COL18A1P39060 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms