Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 AC008741.2-201ENST00000612792 3115 ntBASIC12.07□□□□□ -0.48
HOXD3P31249 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXD3P31249 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HOXD3P31249 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
HOXD3P31249 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
HOXD3P31249 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC12.07□□□□□ -0.48
HOXD3P31249 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
HOXD3P31249 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXD3P31249 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC12.07□□□□□ -0.48
HOXD3P31249 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC12.07□□□□□ -0.48
HOXD3P31249 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
HOXD3P31249 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC12.07□□□□□ -0.48
HOXD3P31249 RARRES2P5-201ENST00000564013 466 ntBASIC12.07□□□□□ -0.48
HOXD3P31249 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 AC010319.3-201ENST00000597028 470 ntBASIC12.07□□□□□ -0.48
HOXD3P31249 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXD3P31249 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HOXD3P31249 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 AL158212.4-201ENST00000624062 1286 ntBASIC12.07□□□□□ -0.48
HOXD3P31249 COX11-210ENST00000639671 696 ntBASIC12.07□□□□□ -0.48
HOXD3P31249 AL033527.4-201ENST00000641026 673 ntBASIC12.07□□□□□ -0.48
HOXD3P31249 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXD3P31249 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
HOXD3P31249 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXD3P31249 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC12.06□□□□□ -0.48
HOXD3P31249 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC12.06□□□□□ -0.48
HOXD3P31249 REXO1L6P-201ENST00000603433 1515 ntBASIC12.06□□□□□ -0.48
HOXD3P31249 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 AL365203.3-201ENST00000609742 2057 ntBASIC12.06□□□□□ -0.48
HOXD3P31249 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC12.06□□□□□ -0.48
HOXD3P31249 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
HOXD3P31249 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
HOXD3P31249 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
HOXD3P31249 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC12.06□□□□□ -0.48
HOXD3P31249 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
HOXD3P31249 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HOXD3P31249 TOMM22P5-201ENST00000416399 439 ntBASIC12.06□□□□□ -0.48
HOXD3P31249 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC12.06□□□□□ -0.48
HOXD3P31249 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HOXD3P31249 RRP7BP-205ENST00000566851 833 ntBASIC12.06□□□□□ -0.48
HOXD3P31249 TMEM261P1-201ENST00000604899 340 ntBASIC12.06□□□□□ -0.48
HOXD3P31249 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
HOXD3P31249 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
HOXD3P31249 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC12.06□□□□□ -0.48
HOXD3P31249 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.06□□□□□ -0.48
HOXD3P31249 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXD3P31249 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms