Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL360270.3-201ENST00000609118 1348 ntBASIC19.07■□□□□ 0.64
COL5A3P25940 PCDHA14-201ENST00000506751 2298 ntBASIC19.07■□□□□ 0.64
COL5A3P25940 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A3P25940 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A3P25940 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
COL5A3P25940 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A3P25940 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC19.06■□□□□ 0.64
COL5A3P25940 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
COL5A3P25940 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A3P25940 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A3P25940 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A3P25940 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.06■□□□□ 0.64
COL5A3P25940 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A3P25940 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A3P25940 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
COL5A3P25940 AC078991.1-201ENST00000437297 610 ntBASIC19.06■□□□□ 0.64
COL5A3P25940 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
COL5A3P25940 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC19.06■□□□□ 0.64
COL5A3P25940 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
COL5A3P25940 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC19.06■□□□□ 0.64
COL5A3P25940 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC19.06■□□□□ 0.64
COL5A3P25940 AC242376.2-201ENST00000619355 883 ntBASIC19.06■□□□□ 0.64
COL5A3P25940 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
COL5A3P25940 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
COL5A3P25940 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC19.06■□□□□ 0.64
COL5A3P25940 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
COL5A3P25940 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A3P25940 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A3P25940 AC105250.1-201ENST00000509378 2057 ntBASIC19.06■□□□□ 0.64
COL5A3P25940 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
COL5A3P25940 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
COL5A3P25940 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC19.05■□□□□ 0.64
COL5A3P25940 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC19.05■□□□□ 0.64
COL5A3P25940 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC19.05■□□□□ 0.64
COL5A3P25940 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC19.05■□□□□ 0.64
COL5A3P25940 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC19.05■□□□□ 0.64
COL5A3P25940 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 TMCO5B-205ENST00000530020 894 ntBASIC19.05■□□□□ 0.64
COL5A3P25940 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
COL5A3P25940 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC19.05■□□□□ 0.64
COL5A3P25940 AC007718.1-201ENST00000621078 280 ntBASIC19.05■□□□□ 0.64
COL5A3P25940 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
COL5A3P25940 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC19.05■□□□□ 0.64
COL5A3P25940 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
COL5A3P25940 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC19.05■□□□□ 0.64
COL5A3P25940 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC19.05■□□□□ 0.64
COL5A3P25940 TLE1P1-201ENST00000422965 589 ntBASIC19.05■□□□□ 0.64
COL5A3P25940 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
COL5A3P25940 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC19.05■□□□□ 0.64
COL5A3P25940 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC19.05■□□□□ 0.64
COL5A3P25940 AC135983.4-201ENST00000564116 1262 ntBASIC19.05■□□□□ 0.64
COL5A3P25940 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 NAT9-211ENST00000580632 799 ntTSL 3 BASIC19.05■□□□□ 0.64
COL5A3P25940 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC19.05■□□□□ 0.64
COL5A3P25940 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A3P25940 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC19.05■□□□□ 0.64
COL5A3P25940 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC19.05■□□□□ 0.64
COL5A3P25940 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
COL5A3P25940 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.04■□□□□ 0.64
COL5A3P25940 AC018629.1-201ENST00000623381 1736 ntBASIC19.04■□□□□ 0.64
COL5A3P25940 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A3P25940 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.04■□□□□ 0.64
COL5A3P25940 API5-202ENST00000420461 2009 ntTSL 2 BASIC19.04■□□□□ 0.64
COL5A3P25940 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A3P25940 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.04■□□□□ 0.64
COL5A3P25940 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A3P25940 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A3P25940 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC19.04■□□□□ 0.64
COL5A3P25940 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.04■□□□□ 0.64
COL5A3P25940 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
COL5A3P25940 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC19.04■□□□□ 0.64
COL5A3P25940 AC026803.1-201ENST00000569130 274 ntBASIC19.04■□□□□ 0.64
COL5A3P25940 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A3P25940 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
COL5A3P25940 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A3P25940 AL109837.1-201ENST00000603272 613 ntBASIC19.04■□□□□ 0.64
COL5A3P25940 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC19.04■□□□□ 0.64
COL5A3P25940 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
COL5A3P25940 CMC2-224ENST00000630396 481 ntTSL 5 BASIC19.04■□□□□ 0.64
COL5A3P25940 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COL5A3P25940 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A3P25940 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
COL5A3P25940 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A3P25940 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A3P25940 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A3P25940 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC19.04■□□□□ 0.64
COL5A3P25940 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A3P25940 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms