Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC3P19447 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC3P19447 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
ERCC3P19447 GZMB-202ENST00000382540 816 ntTSL 5 BASIC18.05■□□□□ 0.48
ERCC3P19447 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC18.05■□□□□ 0.48
ERCC3P19447 FTH1P14-201ENST00000482930 551 ntBASIC18.05■□□□□ 0.48
ERCC3P19447 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
ERCC3P19447 RNA5SP412-201ENST00000516234 123 ntBASIC18.05■□□□□ 0.48
ERCC3P19447 AP000812.2-201ENST00000538934 718 ntBASIC18.05■□□□□ 0.48
ERCC3P19447 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
ERCC3P19447 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC18.05■□□□□ 0.48
ERCC3P19447 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.05■□□□□ 0.48
ERCC3P19447 MIR6869-201ENST00000619434 62 ntBASIC18.05■□□□□ 0.48
ERCC3P19447 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
ERCC3P19447 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
ERCC3P19447 LINC00554-201ENST00000564841 3011 ntBASIC18.05■□□□□ 0.48
ERCC3P19447 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.05■□□□□ 0.48
ERCC3P19447 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC3P19447 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC3P19447 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
ERCC3P19447 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.05■□□□□ 0.48
ERCC3P19447 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC3P19447 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC3P19447 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC3P19447 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.05■□□□□ 0.48
ERCC3P19447 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC3P19447 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC3P19447 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.04■□□□□ 0.48
ERCC3P19447 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC3P19447 TUBB1P2-201ENST00000422712 1306 ntBASIC18.04■□□□□ 0.48
ERCC3P19447 TUBB1P1-201ENST00000503144 1300 ntBASIC18.04■□□□□ 0.48
ERCC3P19447 AC134312.5-201ENST00000568031 1313 ntBASIC18.04■□□□□ 0.48
ERCC3P19447 AL121723.1-201ENST00000445194 1519 ntBASIC18.04■□□□□ 0.48
ERCC3P19447 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
ERCC3P19447 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC3P19447 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC3P19447 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
ERCC3P19447 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC3P19447 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.04■□□□□ 0.48
ERCC3P19447 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.04■□□□□ 0.48
ERCC3P19447 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC3P19447 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
ERCC3P19447 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC3P19447 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC18.04■□□□□ 0.48
ERCC3P19447 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC3P19447 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
ERCC3P19447 AC012441.1-201ENST00000446669 685 ntBASIC18.04■□□□□ 0.48
ERCC3P19447 AL355994.2-201ENST00000447882 704 ntBASIC18.04■□□□□ 0.48
ERCC3P19447 AC093433.1-201ENST00000458048 571 ntBASIC18.04■□□□□ 0.48
ERCC3P19447 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC3P19447 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.04■□□□□ 0.48
ERCC3P19447 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC18.04■□□□□ 0.48
ERCC3P19447 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC18.04■□□□□ 0.48
ERCC3P19447 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC18.04■□□□□ 0.48
ERCC3P19447 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.04■□□□□ 0.48
ERCC3P19447 AC000095.1-201ENST00000603208 874 ntBASIC18.04■□□□□ 0.48
ERCC3P19447 GPR182-203ENST00000622922 591 ntBASIC18.04■□□□□ 0.48
ERCC3P19447 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
ERCC3P19447 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC3P19447 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC3P19447 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
ERCC3P19447 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC3P19447 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC3P19447 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC3P19447 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
ERCC3P19447 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC3P19447 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.03■□□□□ 0.48
ERCC3P19447 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.03■□□□□ 0.48
ERCC3P19447 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC3P19447 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC3P19447 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC3P19447 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.03■□□□□ 0.48
ERCC3P19447 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.03■□□□□ 0.48
ERCC3P19447 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC3P19447 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC3P19447 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
ERCC3P19447 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC3P19447 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC3P19447 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
ERCC3P19447 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC3P19447 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
ERCC3P19447 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC3P19447 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
ERCC3P19447 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC18.03■□□□□ 0.48
ERCC3P19447 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC18.03■□□□□ 0.48
ERCC3P19447 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC3P19447 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC18.03■□□□□ 0.48
ERCC3P19447 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC18.03■□□□□ 0.48
ERCC3P19447 AC106760.1-201ENST00000508690 800 ntBASIC18.03■□□□□ 0.48
ERCC3P19447 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC18.03■□□□□ 0.48
ERCC3P19447 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC18.03■□□□□ 0.48
ERCC3P19447 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC18.03■□□□□ 0.48
ERCC3P19447 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC18.03■□□□□ 0.48
ERCC3P19447 AP001063.1-201ENST00000568332 529 ntBASIC18.03■□□□□ 0.48
ERCC3P19447 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.03■□□□□ 0.48
ERCC3P19447 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC18.03■□□□□ 0.48
ERCC3P19447 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC3P19447 METTL26-214ENST00000614890 801 ntTSL 3 BASIC18.03■□□□□ 0.48
ERCC3P19447 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
ERCC3P19447 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms