Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.84□□□□□ -0.03
SDC1P18827 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SDC1P18827 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
SDC1P18827 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.84□□□□□ -0.03
SDC1P18827 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.84□□□□□ -0.03
SDC1P18827 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.84□□□□□ -0.03
SDC1P18827 RPL13P2-201ENST00000440687 659 ntBASIC14.84□□□□□ -0.03
SDC1P18827 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.84□□□□□ -0.03
SDC1P18827 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.84□□□□□ -0.03
SDC1P18827 AC109322.1-201ENST00000524499 1264 ntBASIC14.84□□□□□ -0.03
SDC1P18827 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.84□□□□□ -0.03
SDC1P18827 SPDYE12P-201ENST00000618416 771 ntBASIC14.84□□□□□ -0.03
SDC1P18827 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.84□□□□□ -0.03
SDC1P18827 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.84□□□□□ -0.03
SDC1P18827 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
SDC1P18827 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
SDC1P18827 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.84□□□□□ -0.03
SDC1P18827 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SDC1P18827 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SDC1P18827 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.84□□□□□ -0.03
SDC1P18827 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SDC1P18827 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.84□□□□□ -0.03
SDC1P18827 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.84□□□□□ -0.03
SDC1P18827 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SDC1P18827 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
SDC1P18827 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SDC1P18827 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SDC1P18827 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SDC1P18827 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.83□□□□□ -0.03
SDC1P18827 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
SDC1P18827 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SDC1P18827 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SDC1P18827 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SDC1P18827 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SDC1P18827 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.83□□□□□ -0.03
SDC1P18827 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
SDC1P18827 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
SDC1P18827 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.83□□□□□ -0.04
SDC1P18827 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.83□□□□□ -0.04
SDC1P18827 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
SDC1P18827 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
SDC1P18827 AL133267.1-201ENST00000398220 340 ntBASIC14.83□□□□□ -0.04
SDC1P18827 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
SDC1P18827 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.83□□□□□ -0.04
SDC1P18827 AC015922.1-201ENST00000421102 1152 ntBASIC14.83□□□□□ -0.04
SDC1P18827 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 AC004967.1-201ENST00000453589 447 ntBASIC14.83□□□□□ -0.04
SDC1P18827 HLA-V-204ENST00000476601 1289 ntBASIC14.83□□□□□ -0.04
SDC1P18827 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.83□□□□□ -0.04
SDC1P18827 AL512361.1-201ENST00000554200 418 ntBASIC14.83□□□□□ -0.04
SDC1P18827 SNHG9-202ENST00000564014 471 ntBASIC14.83□□□□□ -0.04
SDC1P18827 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
SDC1P18827 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.83□□□□□ -0.04
SDC1P18827 LINC01115-203ENST00000606068 577 ntBASIC14.83□□□□□ -0.04
SDC1P18827 AL596442.2-201ENST00000610240 980 ntBASIC14.83□□□□□ -0.04
SDC1P18827 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.83□□□□□ -0.04
SDC1P18827 TEX28P1-201ENST00000613479 1221 ntBASIC14.83□□□□□ -0.04
SDC1P18827 TEX28P2-201ENST00000617764 1221 ntBASIC14.83□□□□□ -0.04
SDC1P18827 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.83□□□□□ -0.04
SDC1P18827 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.83□□□□□ -0.04
SDC1P18827 AF228730.6-201ENST00000641497 218 ntBASIC14.83□□□□□ -0.04
SDC1P18827 AC084121.3-201ENST00000641716 218 ntBASIC14.83□□□□□ -0.04
SDC1P18827 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 ACE3P-201ENST00000423435 1973 ntBASIC14.83□□□□□ -0.04
SDC1P18827 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.83□□□□□ -0.04
SDC1P18827 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.83□□□□□ -0.04
SDC1P18827 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.83□□□□□ -0.04
SDC1P18827 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 NFIC-211ENST00000641145 8399 ntBASIC14.83□□□□□ -0.04
SDC1P18827 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms