Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.72■□□□□ 0.11
COL6A3P12111 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A3P12111 AL138688.1-201ENST00000624851 1594 ntBASIC15.72■□□□□ 0.11
COL6A3P12111 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
COL6A3P12111 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A3P12111 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.72■□□□□ 0.11
COL6A3P12111 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC15.72■□□□□ 0.11
COL6A3P12111 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.72■□□□□ 0.11
COL6A3P12111 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A3P12111 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC15.72■□□□□ 0.11
COL6A3P12111 PPIA-208ENST00000489459 907 ntTSL 2 BASIC15.72■□□□□ 0.11
COL6A3P12111 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A3P12111 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC15.72■□□□□ 0.11
COL6A3P12111 PPIA-210ENST00000620047 827 ntTSL 5 BASIC15.72■□□□□ 0.11
COL6A3P12111 MIR6746-201ENST00000620971 63 ntBASIC15.72■□□□□ 0.11
COL6A3P12111 AC060834.1-201ENST00000443027 2032 ntBASIC15.72■□□□□ 0.11
COL6A3P12111 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A3P12111 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL6A3P12111 ZNF436-AS1-201ENST00000335648 2547 ntBASIC15.72■□□□□ 0.11
COL6A3P12111 GGT3P-204ENST00000453783 1664 ntBASIC15.71■□□□□ 0.11
COL6A3P12111 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.71■□□□□ 0.11
COL6A3P12111 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.71■□□□□ 0.11
COL6A3P12111 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL6A3P12111 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
COL6A3P12111 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.71■□□□□ 0.11
COL6A3P12111 EEF1DP5-201ENST00000431410 772 ntBASIC15.71■□□□□ 0.11
COL6A3P12111 AC006328.1-201ENST00000437571 379 ntBASIC15.71■□□□□ 0.11
COL6A3P12111 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC15.71■□□□□ 0.11
COL6A3P12111 RN7SL300P-201ENST00000582522 318 ntBASIC15.71■□□□□ 0.11
COL6A3P12111 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC15.71■□□□□ 0.11
COL6A3P12111 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL6A3P12111 REXO1L2P-201ENST00000425429 2069 ntBASIC15.71■□□□□ 0.11
COL6A3P12111 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL6A3P12111 AC055811.4-201ENST00000624039 1754 ntBASIC15.71■□□□□ 0.11
COL6A3P12111 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
COL6A3P12111 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL6A3P12111 AC012508.2-201ENST00000567613 1472 ntBASIC15.71■□□□□ 0.11
COL6A3P12111 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.71■□□□□ 0.11
COL6A3P12111 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL6A3P12111 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL6A3P12111 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL6A3P12111 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.71■□□□□ 0.11
COL6A3P12111 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC15.71■□□□□ 0.11
COL6A3P12111 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.71■□□□□ 0.11
COL6A3P12111 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL6A3P12111 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.71■□□□□ 0.11
COL6A3P12111 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC15.71■□□□□ 0.11
COL6A3P12111 FRMPD2B-201ENST00000431305 1347 ntBASIC15.71■□□□□ 0.11
COL6A3P12111 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
COL6A3P12111 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL6A3P12111 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.71■□□□□ 0.1
COL6A3P12111 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
COL6A3P12111 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL6A3P12111 RPSAP15-201ENST00000448168 861 ntBASIC15.71■□□□□ 0.1
COL6A3P12111 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
COL6A3P12111 AC022121.1-201ENST00000484584 579 ntBASIC15.71■□□□□ 0.1
COL6A3P12111 RPS23-204ENST00000507980 836 ntTSL 2 BASIC15.71■□□□□ 0.1
COL6A3P12111 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.71■□□□□ 0.1
COL6A3P12111 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.71■□□□□ 0.1
COL6A3P12111 AC005962.1-201ENST00000584100 773 ntBASIC15.71■□□□□ 0.1
COL6A3P12111 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC15.71■□□□□ 0.1
COL6A3P12111 AC004466.1-201ENST00000599515 1080 ntBASIC15.71■□□□□ 0.1
COL6A3P12111 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
COL6A3P12111 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
COL6A3P12111 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL6A3P12111 FKBP4P6-201ENST00000457486 1332 ntBASIC15.7■□□□□ 0.1
COL6A3P12111 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A3P12111 AC021305.1-201ENST00000520656 1514 ntBASIC15.7■□□□□ 0.1
COL6A3P12111 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A3P12111 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A3P12111 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
COL6A3P12111 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A3P12111 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
COL6A3P12111 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A3P12111 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.7■□□□□ 0.1
COL6A3P12111 AL356000.1-201ENST00000441073 1238 ntBASIC15.7■□□□□ 0.1
COL6A3P12111 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC15.7■□□□□ 0.1
COL6A3P12111 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A3P12111 INO80E-209ENST00000567254 625 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A3P12111 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A3P12111 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A3P12111 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
COL6A3P12111 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A3P12111 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.7■□□□□ 0.1
COL6A3P12111 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
COL6A3P12111 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
COL6A3P12111 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.7■□□□□ 0.1
COL6A3P12111 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A3P12111 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A3P12111 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A3P12111 REXO1L5P-201ENST00000622260 2098 ntBASIC15.7■□□□□ 0.1
COL6A3P12111 AL645937.2-201ENST00000396808 931 ntBASIC15.7■□□□□ 0.1
COL6A3P12111 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
COL6A3P12111 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC15.7■□□□□ 0.1
COL6A3P12111 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A3P12111 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC15.7■□□□□ 0.1
COL6A3P12111 GPX3-202ENST00000517973 612 ntTSL 3 BASIC15.7■□□□□ 0.1
COL6A3P12111 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC15.7■□□□□ 0.1
COL6A3P12111 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC15.7■□□□□ 0.1
COL6A3P12111 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms