Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.25■□□□□ 0.03
PCNAP12004 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
PCNAP12004 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCNAP12004 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCNAP12004 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.25■□□□□ 0.03
PCNAP12004 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCNAP12004 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCNAP12004 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCNAP12004 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
PCNAP12004 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCNAP12004 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCNAP12004 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCNAP12004 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCNAP12004 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PCNAP12004 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCNAP12004 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCNAP12004 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
PCNAP12004 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCNAP12004 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 CETN4P-206ENST00000642099 2168 ntBASIC15.24■□□□□ 0.03
PCNAP12004 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.24■□□□□ 0.03
PCNAP12004 TMBIM7P-203ENST00000641617 1718 ntBASIC15.24■□□□□ 0.03
PCNAP12004 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
PCNAP12004 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 AL139400.1-201ENST00000366220 510 ntBASIC15.24■□□□□ 0.03
PCNAP12004 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PCNAP12004 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.24■□□□□ 0.03
PCNAP12004 HLA-J-203ENST00000494367 1087 ntBASIC15.24■□□□□ 0.03
PCNAP12004 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.24■□□□□ 0.03
PCNAP12004 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.24■□□□□ 0.03
PCNAP12004 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.24■□□□□ 0.03
PCNAP12004 HNRNPUP1-201ENST00000554987 333 ntBASIC15.24■□□□□ 0.03
PCNAP12004 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.24■□□□□ 0.03
PCNAP12004 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.24■□□□□ 0.03
PCNAP12004 Z92544.3-201ENST00000624747 417 ntBASIC15.24■□□□□ 0.03
PCNAP12004 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.24■□□□□ 0.03
PCNAP12004 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 CICP24-201ENST00000605464 2705 ntBASIC15.24■□□□□ 0.03
PCNAP12004 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PCNAP12004 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PCNAP12004 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PCNAP12004 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.24■□□□□ 0.03
PCNAP12004 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.24■□□□□ 0.03
PCNAP12004 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 AC127383.1-201ENST00000444697 1800 ntBASIC15.24■□□□□ 0.03
PCNAP12004 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.24■□□□□ 0.03
PCNAP12004 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.24■□□□□ 0.03
PCNAP12004 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.24■□□□□ 0.03
PCNAP12004 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCNAP12004 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
PCNAP12004 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
PCNAP12004 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
PCNAP12004 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.24■□□□□ 0.03
PCNAP12004 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.23■□□□□ 0.03
PCNAP12004 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.23■□□□□ 0.03
PCNAP12004 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 AC090616.6-203ENST00000579186 1945 ntBASIC15.23■□□□□ 0.03
PCNAP12004 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 AC009090.5-201ENST00000624886 2285 ntBASIC15.23■□□□□ 0.03
PCNAP12004 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PCNAP12004 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PCNAP12004 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.23■□□□□ 0.03
PCNAP12004 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.23■□□□□ 0.03
PCNAP12004 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.23■□□□□ 0.03
PCNAP12004 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
PCNAP12004 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.23■□□□□ 0.03
PCNAP12004 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 CNN2P2-201ENST00000443536 909 ntBASIC15.23■□□□□ 0.03
PCNAP12004 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCNAP12004 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.23■□□□□ 0.03
PCNAP12004 CNN2P3-201ENST00000450201 906 ntBASIC15.23■□□□□ 0.03
PCNAP12004 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.23■□□□□ 0.03
PCNAP12004 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.23■□□□□ 0.03
PCNAP12004 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.23■□□□□ 0.03
PCNAP12004 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms