Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL442647.2-201ENST00000429864 857 ntBASIC14.18□□□□□ -0.14
HOXD4P09016 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
HOXD4P09016 TTTY23B-201ENST00000442790 549 ntBASIC14.18□□□□□ -0.14
HOXD4P09016 AC022210.1-201ENST00000449856 793 ntBASIC14.18□□□□□ -0.14
HOXD4P09016 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
HOXD4P09016 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.18□□□□□ -0.14
HOXD4P09016 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXD4P09016 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.18□□□□□ -0.14
HOXD4P09016 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXD4P09016 CTBP2P3-201ENST00000585629 1255 ntBASIC14.18□□□□□ -0.14
HOXD4P09016 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXD4P09016 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.18□□□□□ -0.14
HOXD4P09016 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.18□□□□□ -0.14
HOXD4P09016 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 REXO1L8P-201ENST00000604378 1897 ntBASIC14.18□□□□□ -0.14
HOXD4P09016 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC14.18□□□□□ -0.14
HOXD4P09016 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 AC005089.1-201ENST00000619486 2241 ntBASIC14.18□□□□□ -0.14
HOXD4P09016 ME2P1-201ENST00000426028 1970 ntBASIC14.18□□□□□ -0.14
HOXD4P09016 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXD4P09016 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 CLK3P2-201ENST00000427566 1453 ntBASIC14.18□□□□□ -0.14
HOXD4P09016 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.18□□□□□ -0.14
HOXD4P09016 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
HOXD4P09016 BNIP3P1-202ENST00000550043 1585 ntBASIC14.17□□□□□ -0.14
HOXD4P09016 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXD4P09016 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
HOXD4P09016 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXD4P09016 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
HOXD4P09016 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXD4P09016 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXD4P09016 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
HOXD4P09016 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.17□□□□□ -0.14
HOXD4P09016 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXD4P09016 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXD4P09016 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.17□□□□□ -0.14
HOXD4P09016 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXD4P09016 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXD4P09016 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.17□□□□□ -0.14
HOXD4P09016 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.17□□□□□ -0.14
HOXD4P09016 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.17□□□□□ -0.14
HOXD4P09016 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
HOXD4P09016 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
HOXD4P09016 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXD4P09016 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXD4P09016 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXD4P09016 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXD4P09016 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
HOXD4P09016 AC079781.5-202ENST00000641784 3743 ntBASIC14.17□□□□□ -0.14
HOXD4P09016 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 AC015656.1-201ENST00000624209 3578 ntBASIC14.17□□□□□ -0.14
HOXD4P09016 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXD4P09016 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
HOXD4P09016 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD4P09016 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
HOXD4P09016 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
HOXD4P09016 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
HOXD4P09016 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.16□□□□□ -0.14
HOXD4P09016 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
HOXD4P09016 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms