Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 MTHFR-210ENST00000641407 2387 ntBASIC11.45□□□□□ -0.58
SMKR1H3BMG3 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 PMS2P4-201ENST00000412466 1052 ntBASIC11.45□□□□□ -0.58
SMKR1H3BMG3 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 PCED1CP-201ENST00000419887 785 ntBASIC11.45□□□□□ -0.58
SMKR1H3BMG3 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 FGFR3P6-201ENST00000457012 610 ntBASIC11.45□□□□□ -0.58
SMKR1H3BMG3 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 QPRT-203ENST00000562473 579 ntTSL 3 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 AC025062.2-201ENST00000605477 670 ntBASIC11.45□□□□□ -0.58
SMKR1H3BMG3 ACTL9-202ENST00000612068 1252 ntBASIC11.45□□□□□ -0.58
SMKR1H3BMG3 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 AL355877.3-201ENST00000622820 899 ntBASIC11.45□□□□□ -0.58
SMKR1H3BMG3 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 AC131212.3-201ENST00000624087 4219 ntBASIC11.45□□□□□ -0.58
SMKR1H3BMG3 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
SMKR1H3BMG3 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 AL645939.2-201ENST00000427340 991 ntBASIC11.44□□□□□ -0.58
SMKR1H3BMG3 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 HS6ST1P1-201ENST00000481504 1234 ntBASIC11.44□□□□□ -0.58
SMKR1H3BMG3 FOSL1P1-201ENST00000511041 816 ntBASIC11.44□□□□□ -0.58
SMKR1H3BMG3 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 RIN3-211ENST00000557762 517 ntTSL 3 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 ARHGAP23P1-201ENST00000562773 1937 ntBASIC11.44□□□□□ -0.58
SMKR1H3BMG3 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms