Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
CHMP1AQ9HD42 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CHMP1AQ9HD42 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CHMP1AQ9HD42 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CHMP1AQ9HD42 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.52□□□□□ -0.24
CHMP1AQ9HD42 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CHMP1AQ9HD42 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CHMP1AQ9HD42 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CHMP1AQ9HD42 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.52□□□□□ -0.24
CHMP1AQ9HD42 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CHMP1AQ9HD42 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CHMP1AQ9HD42 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 PPIE-208ENST00000470213 927 ntTSL 3 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 MAL2-202ENST00000531508 892 ntTSL 3 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 AQP6-205ENST00000618286 829 ntTSL 5 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 AC004877.2-201ENST00000623941 599 ntBASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.25
CHMP1AQ9HD42 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms