Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTCHD1Q96NR3 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
PTCHD1Q96NR3 AC092850.2-201ENST00000623821 2697 ntBASIC14.72□□□□□ -0.05
PTCHD1Q96NR3 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
PTCHD1Q96NR3 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTCHD1Q96NR3 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTCHD1Q96NR3 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.72□□□□□ -0.05
PTCHD1Q96NR3 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTCHD1Q96NR3 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
PTCHD1Q96NR3 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.72□□□□□ -0.05
PTCHD1Q96NR3 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 CLK3P2-201ENST00000427566 1453 ntBASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 MYCLP2-201ENST00000449268 967 ntBASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 KRT18P43-201ENST00000469825 1281 ntBASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 AC008494.3-201ENST00000606615 944 ntBASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTCHD1Q96NR3 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.71□□□□□ -0.06
PTCHD1Q96NR3 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
PTCHD1Q96NR3 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PTCHD1Q96NR3 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PTCHD1Q96NR3 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PTCHD1Q96NR3 AL121723.1-201ENST00000445194 1519 ntBASIC14.71□□□□□ -0.06
PTCHD1Q96NR3 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.71□□□□□ -0.06
PTCHD1Q96NR3 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.71□□□□□ -0.06
PTCHD1Q96NR3 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
PTCHD1Q96NR3 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.71□□□□□ -0.06
PTCHD1Q96NR3 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 AL391069.4-201ENST00000609583 481 ntBASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 AC025048.6-201ENST00000634326 1161 ntBASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms