Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 KLK8-202ENST00000320838 456 ntTSL 5 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 TSFM-210ENST00000550559 897 ntTSL 5 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 NME4-212ENST00000621774 904 ntTSL 3 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 AC023024.2-201ENST00000623561 1993 ntBASIC11.73□□□□□ -0.53
LINC00477Q96M19 AL607033.1-201ENST00000623900 1599 ntBASIC11.73□□□□□ -0.53
LINC00477Q96M19 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 AC013726.1-201ENST00000563747 2285 ntBASIC11.72□□□□□ -0.53
LINC00477Q96M19 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 LINC02228-204ENST00000642115 2962 ntBASIC11.72□□□□□ -0.53
LINC00477Q96M19 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00477Q96M19 PMP22-202ENST00000395936 816 ntTSL 3 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 MIR940-201ENST00000401276 94 ntBASIC11.72□□□□□ -0.53
LINC00477Q96M19 AZGP1P1-201ENST00000411909 902 ntBASIC11.72□□□□□ -0.53
LINC00477Q96M19 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 HTR5BP-201ENST00000430851 1154 ntBASIC11.72□□□□□ -0.53
LINC00477Q96M19 AC005237.2-201ENST00000434368 219 ntBASIC11.72□□□□□ -0.53
LINC00477Q96M19 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC11.72□□□□□ -0.53
LINC00477Q96M19 AC069335.1-201ENST00000489972 472 ntBASIC11.72□□□□□ -0.53
LINC00477Q96M19 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms