Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 PRAL-201ENST00000624952 3286 ntBASIC14.04□□□□□ -0.16
CPNE4Q96A23 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 AC104596.2-201ENST00000512793 793 ntBASIC14.04□□□□□ -0.16
CPNE4Q96A23 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.04□□□□□ -0.16
CPNE4Q96A23 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CPNE4Q96A23 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 AC093726.1-201ENST00000608064 963 ntBASIC14.03□□□□□ -0.16
CPNE4Q96A23 AL391069.4-201ENST00000609583 481 ntBASIC14.03□□□□□ -0.16
CPNE4Q96A23 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.03□□□□□ -0.16
CPNE4Q96A23 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CPNE4Q96A23 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CPNE4Q96A23 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CPNE4Q96A23 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CPNE4Q96A23 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CPNE4Q96A23 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.02□□□□□ -0.16
CPNE4Q96A23 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CPNE4Q96A23 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CPNE4Q96A23 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CPNE4Q96A23 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CPNE4Q96A23 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CPNE4Q96A23 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
CPNE4Q96A23 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms