Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 EMC4-209ENST00000559421 497 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AMT-206ENST00000458307 1860 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 NCDN-203ENST00000373253 3677 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 WDR47-203ENST00000369962 4199 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 DPM2-202ENST00000373110 738 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AC092337.1-201ENST00000568699 1129 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AC018892.3-201ENST00000623986 2499 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AC092902.5-201ENST00000641650 3256 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 DCAF6-204ENST00000432587 3522 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 U82695.1-201ENST00000635752 1889 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 KCNMA1-232ENST00000638306 3811 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AL645937.6-201ENST00000641122 3727 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 MYCLP2-201ENST00000449268 967 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 KRT17P7-201ENST00000451704 1104 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 FO681548.1-201ENST00000455617 1132 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AC015936.2-201ENST00000593177 259 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PPP1R26P4-201ENST00000619065 3527 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms