Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 AL391069.4-201ENST00000609583 481 ntBASIC18.83■□□□□ 0.6
VPS53Q5VIR6 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.6
VPS53Q5VIR6 DBET-201ENST00000630918 3363 ntBASIC18.82■□□□□ 0.6
VPS53Q5VIR6 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 DOC2GP-202ENST00000514950 1163 ntBASIC18.82■□□□□ 0.6
VPS53Q5VIR6 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 AC138035.3-201ENST00000622706 2791 ntBASIC18.82■□□□□ 0.6
VPS53Q5VIR6 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VPS53Q5VIR6 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 OARD1-208ENST00000469104 704 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 AL158212.4-201ENST00000624062 1286 ntBASIC18.81■□□□□ 0.6
VPS53Q5VIR6 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms