Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.04■□□□□ -0
COL28A1Q2UY09 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.04■□□□□ -0
COL28A1Q2UY09 AL442647.2-201ENST00000429864 857 ntBASIC15.04■□□□□ -0
COL28A1Q2UY09 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC15.04■□□□□ -0
COL28A1Q2UY09 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.04■□□□□ -0
COL28A1Q2UY09 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.04■□□□□ -0
COL28A1Q2UY09 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC15.04■□□□□ -0
COL28A1Q2UY09 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
COL28A1Q2UY09 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC15.04■□□□□ -0
COL28A1Q2UY09 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.04■□□□□ -0
COL28A1Q2UY09 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC15.04■□□□□ -0
COL28A1Q2UY09 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.04■□□□□ -0
COL28A1Q2UY09 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.04■□□□□ -0
COL28A1Q2UY09 AC025048.3-201ENST00000590609 569 ntBASIC15.04■□□□□ -0
COL28A1Q2UY09 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC15.04■□□□□ -0
COL28A1Q2UY09 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.04■□□□□ -0
COL28A1Q2UY09 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.04■□□□□ -0
COL28A1Q2UY09 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
COL28A1Q2UY09 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
COL28A1Q2UY09 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.04■□□□□ -0
COL28A1Q2UY09 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.04■□□□□ -0
COL28A1Q2UY09 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
COL28A1Q2UY09 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
COL28A1Q2UY09 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
COL28A1Q2UY09 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC15.03■□□□□ -0
COL28A1Q2UY09 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
COL28A1Q2UY09 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
COL28A1Q2UY09 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.03■□□□□ -0
COL28A1Q2UY09 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.03■□□□□ -0
COL28A1Q2UY09 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
COL28A1Q2UY09 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
COL28A1Q2UY09 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.03■□□□□ -0
COL28A1Q2UY09 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.03■□□□□ -0
COL28A1Q2UY09 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
COL28A1Q2UY09 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.03■□□□□ -0
COL28A1Q2UY09 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
COL28A1Q2UY09 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.03■□□□□ -0
COL28A1Q2UY09 FNTAP2-201ENST00000430308 634 ntBASIC15.03■□□□□ -0
COL28A1Q2UY09 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC15.03■□□□□ -0
COL28A1Q2UY09 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
COL28A1Q2UY09 SCARNA20.5-201ENST00000516991 142 ntBASIC15.03■□□□□ -0
COL28A1Q2UY09 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.03■□□□□ -0
COL28A1Q2UY09 AC104640.1-201ENST00000562617 2109 ntBASIC15.03■□□□□ -0
COL28A1Q2UY09 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.03■□□□□ -0
COL28A1Q2UY09 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.03■□□□□ -0
COL28A1Q2UY09 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC15.03■□□□□ -0
COL28A1Q2UY09 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.03■□□□□ -0
COL28A1Q2UY09 PRKN-211ENST00000615065 261 ntTSL 5 BASIC15.03■□□□□ -0
COL28A1Q2UY09 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
COL28A1Q2UY09 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC15.03■□□□□ -0
COL28A1Q2UY09 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.03■□□□□ -0
COL28A1Q2UY09 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
COL28A1Q2UY09 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
COL28A1Q2UY09 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL28A1Q2UY09 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
COL28A1Q2UY09 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.02■□□□□ -0
COL28A1Q2UY09 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.02■□□□□ -0
COL28A1Q2UY09 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC15.02■□□□□ -0
COL28A1Q2UY09 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.02■□□□□ -0
COL28A1Q2UY09 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.02■□□□□ -0
COL28A1Q2UY09 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
COL28A1Q2UY09 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms