Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 POLL-217ENST00000628479 1953 ntTSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 WRB-204ENST00000398753 699 ntTSL 3 BASIC12.63□□□□□ -0.39
CX3CL1P78423 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 HLA-V-204ENST00000476601 1289 ntBASIC12.63□□□□□ -0.39
CX3CL1P78423 AC069120.2-201ENST00000524091 540 ntBASIC12.63□□□□□ -0.39
CX3CL1P78423 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
CX3CL1P78423 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
CX3CL1P78423 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC12.62□□□□□ -0.39
CX3CL1P78423 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
CX3CL1P78423 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC12.62□□□□□ -0.39
CX3CL1P78423 PCDHA3-202ENST00000532566 4594 ntBASIC12.62□□□□□ -0.39
CX3CL1P78423 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
CX3CL1P78423 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
CX3CL1P78423 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
CX3CL1P78423 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC12.62□□□□□ -0.39
CX3CL1P78423 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
CX3CL1P78423 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
CX3CL1P78423 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 AZGP1P1-201ENST00000411909 902 ntBASIC12.62□□□□□ -0.39
CX3CL1P78423 RPL37AP1-201ENST00000412502 279 ntBASIC12.62□□□□□ -0.39
CX3CL1P78423 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC12.62□□□□□ -0.39
CX3CL1P78423 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC12.62□□□□□ -0.39
CX3CL1P78423 SERBP1P3-201ENST00000459980 809 ntBASIC12.62□□□□□ -0.39
CX3CL1P78423 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.62□□□□□ -0.39
CX3CL1P78423 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC12.62□□□□□ -0.39
CX3CL1P78423 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC12.62□□□□□ -0.39
CX3CL1P78423 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC12.62□□□□□ -0.39
CX3CL1P78423 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC12.62□□□□□ -0.39
CX3CL1P78423 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC12.62□□□□□ -0.39
CX3CL1P78423 AC073592.8-201ENST00000624126 511 ntBASIC12.62□□□□□ -0.39
CX3CL1P78423 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC12.62□□□□□ -0.39
CX3CL1P78423 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC12.62□□□□□ -0.39
CX3CL1P78423 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
CX3CL1P78423 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
CX3CL1P78423 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.62□□□□□ -0.39
CX3CL1P78423 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC12.62□□□□□ -0.39
CX3CL1P78423 FLII-221ENST00000578558 2377 ntTSL 5 BASIC12.62□□□□□ -0.39
CX3CL1P78423 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CL1P78423 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms