Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.8□□□□□ -0.04
LIM2P55344 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LIM2P55344 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
LIM2P55344 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LIM2P55344 AL121723.1-201ENST00000445194 1519 ntBASIC14.8□□□□□ -0.04
LIM2P55344 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
LIM2P55344 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.8□□□□□ -0.04
LIM2P55344 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LIM2P55344 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.8□□□□□ -0.04
LIM2P55344 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 AC112693.3-201ENST00000624819 1983 ntBASIC14.8□□□□□ -0.04
LIM2P55344 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LIM2P55344 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.8□□□□□ -0.04
LIM2P55344 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LIM2P55344 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.8□□□□□ -0.04
LIM2P55344 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LIM2P55344 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
LIM2P55344 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LIM2P55344 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.79□□□□□ -0.04
LIM2P55344 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
LIM2P55344 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.79□□□□□ -0.04
LIM2P55344 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.79□□□□□ -0.04
LIM2P55344 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
LIM2P55344 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.79□□□□□ -0.04
LIM2P55344 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.79□□□□□ -0.04
LIM2P55344 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.79□□□□□ -0.04
LIM2P55344 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.79□□□□□ -0.04
LIM2P55344 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.79□□□□□ -0.04
LIM2P55344 KRT18P43-201ENST00000469825 1281 ntBASIC14.79□□□□□ -0.04
LIM2P55344 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.79□□□□□ -0.04
LIM2P55344 TPRX2P-201ENST00000535362 881 ntBASIC14.79□□□□□ -0.04
LIM2P55344 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.79□□□□□ -0.04
LIM2P55344 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.79□□□□□ -0.04
LIM2P55344 RN7SL204P-201ENST00000582831 262 ntBASIC14.79□□□□□ -0.04
LIM2P55344 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 LINC02560-201ENST00000596379 459 ntBASIC14.79□□□□□ -0.04
LIM2P55344 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.79□□□□□ -0.04
LIM2P55344 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.79□□□□□ -0.04
LIM2P55344 AL158212.4-201ENST00000624062 1286 ntBASIC14.79□□□□□ -0.04
LIM2P55344 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.79□□□□□ -0.04
LIM2P55344 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
LIM2P55344 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIM2P55344 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.79□□□□□ -0.04
LIM2P55344 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
LIM2P55344 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms