Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
CDH6P55285 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CDH6P55285 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.25■□□□□ 0.19
CDH6P55285 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH6P55285 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CDH6P55285 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
CDH6P55285 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.25■□□□□ 0.19
CDH6P55285 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 AC126755.1-201ENST00000525846 6405 ntBASIC16.24■□□□□ 0.19
CDH6P55285 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH6P55285 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CDH6P55285 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH6P55285 AC087499.5-201ENST00000452760 1342 ntBASIC16.24■□□□□ 0.19
CDH6P55285 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH6P55285 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH6P55285 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CDH6P55285 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 MIR943-201ENST00000401286 94 ntBASIC16.24■□□□□ 0.19
CDH6P55285 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.24■□□□□ 0.19
CDH6P55285 PMS2P2-201ENST00000425039 1128 ntBASIC16.24■□□□□ 0.19
CDH6P55285 RPL13P2-201ENST00000440687 659 ntBASIC16.24■□□□□ 0.19
CDH6P55285 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.24■□□□□ 0.19
CDH6P55285 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.24■□□□□ 0.19
CDH6P55285 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.24■□□□□ 0.19
CDH6P55285 SDHAP3-202ENST00000515467 728 ntBASIC16.24■□□□□ 0.19
CDH6P55285 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.24■□□□□ 0.19
CDH6P55285 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
CDH6P55285 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 AC100757.3-201ENST00000622361 1406 ntBASIC16.24■□□□□ 0.19
CDH6P55285 PCDHA3-202ENST00000532566 4594 ntBASIC16.24■□□□□ 0.19
CDH6P55285 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 AL161772.1-201ENST00000610494 4412 ntBASIC16.24■□□□□ 0.19
CDH6P55285 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CDH6P55285 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH6P55285 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CDH6P55285 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH6P55285 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH6P55285 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CDH6P55285 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.23■□□□□ 0.19
CDH6P55285 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CDH6P55285 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 RPL5P21-201ENST00000404620 815 ntBASIC16.23■□□□□ 0.19
CDH6P55285 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH6P55285 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH6P55285 AC015922.1-201ENST00000421102 1152 ntBASIC16.23■□□□□ 0.19
CDH6P55285 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.23■□□□□ 0.19
CDH6P55285 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH6P55285 IGHV3-42-201ENST00000520410 361 ntBASIC16.23■□□□□ 0.19
CDH6P55285 DUX4L27-201ENST00000554796 1261 ntBASIC16.23■□□□□ 0.19
CDH6P55285 AC044860.1-202ENST00000559481 777 ntBASIC16.23■□□□□ 0.19
CDH6P55285 AL844908.2-201ENST00000609461 460 ntBASIC16.23■□□□□ 0.19
CDH6P55285 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CDH6P55285 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
CDH6P55285 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CDH6P55285 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH6P55285 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms