Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC12.09□□□□□ -0.47
HOXD3P31249 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC12.09□□□□□ -0.47
HOXD3P31249 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC12.09□□□□□ -0.47
HOXD3P31249 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 PKIG-203ENST00000372887 769 ntTSL 3 BASIC12.09□□□□□ -0.47
HOXD3P31249 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC12.09□□□□□ -0.47
HOXD3P31249 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXD3P31249 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC12.09□□□□□ -0.47
HOXD3P31249 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC12.09□□□□□ -0.47
HOXD3P31249 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC12.09□□□□□ -0.47
HOXD3P31249 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXD3P31249 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC12.09□□□□□ -0.47
HOXD3P31249 AC008735.3-201ENST00000596646 500 ntBASIC12.09□□□□□ -0.47
HOXD3P31249 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
HOXD3P31249 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXD3P31249 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
HOXD3P31249 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
HOXD3P31249 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.47
HOXD3P31249 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.47
HOXD3P31249 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
HOXD3P31249 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXD3P31249 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXD3P31249 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXD3P31249 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
HOXD3P31249 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC12.08□□□□□ -0.48
HOXD3P31249 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXD3P31249 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXD3P31249 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
HOXD3P31249 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXD3P31249 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXD3P31249 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXD3P31249 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC12.08□□□□□ -0.48
HOXD3P31249 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXD3P31249 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
HOXD3P31249 RPL28-204ENST00000431533 590 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXD3P31249 KRT18P64-201ENST00000434946 1219 ntBASIC12.08□□□□□ -0.48
HOXD3P31249 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC12.08□□□□□ -0.48
HOXD3P31249 KRT223P-202ENST00000449164 1292 ntBASIC12.08□□□□□ -0.48
HOXD3P31249 GALT-202ENST00000450095 1280 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXD3P31249 AC092658.1-201ENST00000505836 891 ntBASIC12.08□□□□□ -0.48
HOXD3P31249 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC12.08□□□□□ -0.48
HOXD3P31249 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXD3P31249 SNX29P1-201ENST00000548357 1007 ntBASIC12.08□□□□□ -0.48
HOXD3P31249 RPL28-206ENST00000558752 671 ntTSL 3 BASIC12.08□□□□□ -0.48
HOXD3P31249 CMC2-214ENST00000565925 640 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXD3P31249 ORC6-206ENST00000568364 888 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXD3P31249 AC036164.1-201ENST00000570544 333 ntBASIC12.08□□□□□ -0.48
HOXD3P31249 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC12.08□□□□□ -0.48
HOXD3P31249 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC12.08□□□□□ -0.48
HOXD3P31249 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
HOXD3P31249 MIR6775-201ENST00000617557 69 ntBASIC12.08□□□□□ -0.48
HOXD3P31249 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXD3P31249 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXD3P31249 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXD3P31249 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC12.08□□□□□ -0.48
HOXD3P31249 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC12.08□□□□□ -0.48
HOXD3P31249 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXD3P31249 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXD3P31249 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
HOXD3P31249 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXD3P31249 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms