Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 AC098850.1-201ENST00000419919 790 ntBASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 AL596257.1-201ENST00000641463 2694 ntBASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 CU639417.3-201ENST00000624240 1404 ntBASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.45■□□□□ 0.38
COL4A3BPQ9Y5P4 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 AP006294.1-201ENST00000415407 339 ntBASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
COL4A3BPQ9Y5P4 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 TOMM22P5-201ENST00000416399 439 ntBASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 ELK1P1-201ENST00000485699 580 ntBASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
COL4A3BPQ9Y5P4 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms