Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TKT-202ENST00000423516 2075 ntTSL 2 BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC29.31■■■□□ 2.28
SHROOM4Q9ULL8 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 RN7SL555P-201ENST00000584742 339 ntBASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 AL023775.1-201ENST00000454907 1746 ntBASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC29.3■■■□□ 2.28
SHROOM4Q9ULL8 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 FOS-202ENST00000535987 1402 ntTSL 2 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 ATP6V0CP2-201ENST00000469409 207 ntBASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 AP000346.4-201ENST00000614827 381 ntBASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC29.29■■■□□ 2.28
SHROOM4Q9ULL8 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 AC134698.3-201ENST00000523880 214 ntBASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 AC145423.3-201ENST00000615987 467 ntBASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
SHROOM4Q9ULL8 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 MFF-204ENST00000353339 2186 ntTSL 5 BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 KRT8P35-201ENST00000483942 1338 ntBASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 AC044849.1-201ENST00000519737 1188 ntBASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 RN7SL48P-201ENST00000579283 293 ntBASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC29.27■■■□□ 2.28
SHROOM4Q9ULL8 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC29.26■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms