Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 AC090616.6-203ENST00000579186 1945 ntBASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.02
CUEDC1Q9NWM3 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 AC136621.1-201ENST00000624017 2304 ntBASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 IGHV3-71-201ENST00000523324 359 ntBASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 SRD5A3P1-201ENST00000603021 949 ntBASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 AC020658.6-201ENST00000623564 1870 ntBASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CUEDC1Q9NWM3 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms