Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SMC4Q9NTJ3 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SMC4Q9NTJ3 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SMC4Q9NTJ3 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 PKIG-203ENST00000372887 769 ntTSL 3 BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 AL391069.4-201ENST00000609583 481 ntBASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 AJ011932.1-201ENST00000621707 465 ntBASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 MST1L-201ENST00000442552 2185 ntBASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC20.01■□□□□ 0.79
SMC4Q9NTJ3 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 AC091951.1-201ENST00000512854 2465 ntBASIC20■□□□□ 0.79
SMC4Q9NTJ3 CICP11-201ENST00000434745 2827 ntBASIC20■□□□□ 0.79
SMC4Q9NTJ3 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 STRN-202ENST00000379213 2254 ntTSL 5 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 SPDYE19P-201ENST00000338590 713 ntBASIC20■□□□□ 0.79
SMC4Q9NTJ3 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 AC023310.3-201ENST00000557027 670 ntBASIC20■□□□□ 0.79
SMC4Q9NTJ3 SPCS2P1-201ENST00000561636 679 ntBASIC20■□□□□ 0.79
SMC4Q9NTJ3 AC100756.1-201ENST00000562736 682 ntBASIC20■□□□□ 0.79
SMC4Q9NTJ3 AC138749.3-201ENST00000567691 622 ntBASIC20■□□□□ 0.79
SMC4Q9NTJ3 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 AC116165.1-201ENST00000611806 668 ntBASIC20■□□□□ 0.79
SMC4Q9NTJ3 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 NID2-208ENST00000617139 3827 ntTSL 5 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC20■□□□□ 0.79
SMC4Q9NTJ3 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMC4Q9NTJ3 AC023157.3-201ENST00000619086 2088 ntBASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 AC148477.4-201ENST00000613430 1793 ntBASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 MIR661-201ENST00000384842 89 ntBASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 SERBP1P5-201ENST00000510079 1181 ntBASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 AC011467.4-201ENST00000594891 528 ntBASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 HFE2-206ENST00000634927 506 ntTSL 4 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms