Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP4AQ9BY43 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP4AQ9BY43 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP4AQ9BY43 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP4AQ9BY43 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP4AQ9BY43 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP4AQ9BY43 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP4AQ9BY43 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP4AQ9BY43 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC19.83■□□□□ 0.76
CHMP4AQ9BY43 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 AC012441.1-201ENST00000446669 685 ntBASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 AL355864.2-201ENST00000447420 863 ntBASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 AC068587.3-201ENST00000526613 355 ntBASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 AL603764.1-201ENST00000636452 321 ntBASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 PRSS30P-206ENST00000641773 873 ntBASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4AQ9BY43 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 AMT-224ENST00000635808 1610 ntTSL 5 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 GK-202ENST00000378941 458 ntTSL 3 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 AC104457.1-201ENST00000401024 814 ntBASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 AC093433.1-201ENST00000458048 571 ntBASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 AC008735.3-201ENST00000596646 500 ntBASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 AC005252.2-201ENST00000624630 1141 ntBASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4AQ9BY43 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 AC093525.8-201ENST00000624099 1342 ntBASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms